Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00776 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAATGGCAAATATGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCGAGTTCCATTCGTCGTCAGCAGCTTATCAGGGAGTGTCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCTTCTCGGCTACAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAAAATGGCTATTTCCGCCAGCATACTCAAAATACGACGCTTGGAGCTAAAGATGCAAGTTGTGAACCGGTGGTACCAAGCGGTCAACACAATTTGGCATCTCAGCATCCGCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTCCTAAATGTGCTGCCAACAGCCAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCTCGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTCAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTCAGAGCCGAGATGTTGCCGAGTGGATACCTGATAAGACCATGTGAAGGAGGCGGTTCAATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTACTGCGTCCATTGTATGAATCAAGCACTGTTCTTGCTCAAAAGATGACGATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGGAACAGGCTGGAGTAGACGCCCTGCAGCCCTACGTTCACTTGGTCAAAGGCTCACCCGGGGGTTTAACGAAGCACTAAACGGGTTCAACGATGAAGGATGGTCCGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCAAACGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCGTCGATGCTATTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTACGGGAGCACCGTTCCGAATGGGCAGACAACAATATTGATGCTTATTCAGCTGCCGCTGTTAAGGTTGGTCCATGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACCATCGAGCACGAAGAGTTTCTTGAAGTGATTAAACTGGAAGGCATTGGCCATACTCCTGAAGATGCAATGATGCCTAGAGAAATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAAAACGCTATAGGCACTTGTGCTGAGTTAATCTTTGCTCCAATTGATGCCTCTTTTGCCGACGATGCGCCTCTATTACCCTCAGGGTTTCGGATCATACCACTTGATTCTGGAAAGGAAGCATCCAGCCCGAATCGCACACTCGATCTTGCTTCTGCTCTTGAAATTGGTCCTGCTGGAAATAGAGCACCAAATGACTCTGTAAATTCTGGGTGTTCAAGGTCTGTAATGACGATTGCGTTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCTATGGCTCGACAATATGTTCGTAGTATTATATCATCGGTCCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACACGGCGGACTACGATCTCCACTTGGCACTCCTGAAGCACAGACGCTCGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGGGTGGAGCTATTAAAATCTGGTATCGAAGGAGGGGAGCTTGTCCTGAAAACATTGTGGCATCATTCAGATGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTTGCCAATCAGGCAGGCCTCGACATGCTCGAGACAACCTTAGTCGCACTTCAAGACATAACTTTGGAAAAGATATTTGACGACCATGGAAAAAAGACCCTCTGCTCAGAGTTTCCACAGATAATGCAACAGGGATTTGCATGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCGTATGAACGAGCTGTGGCTTGGAAGGTGCTAAACGAAGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2514 47.3 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLGAKDASCEPVVPSGQHNLASQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNGTGWSRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCSRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGIEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6215474 6221675 - CmaCh17G007760.1 Cma17g00776 312671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00776 837 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cma17g00776 837 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cma17g00776 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Cma17g00776 837 Pfam START domain 161 369 IPR002913 GO:0008289
Cma17g00776 837 SMART HOX_1 14 80 IPR001356 GO:0003677
Cma17g00776 837 CDD START_ArGLABRA2_like 155 371 - -
Cma17g00776 837 Gene3D - 10 83 - -
Cma17g00776 837 SUPERFAMILY Bet v1-like 160 371 - -
Cma17g00776 837 CDD bZIP 69 108 - -
Cma17g00776 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Cma17g00776 837 Gene3D - 195 378 IPR023393 -
Cma17g00776 837 CDD homeodomain 17 77 IPR001356 GO:0003677
Cma17g00776 837 Pfam MEKHLA domain 694 836 IPR013978 -
Cma17g00776 837 Coils Coil 72 113 - -
Cma17g00776 837 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289
Cma17g00776 837 SMART START_1 160 370 IPR002913 GO:0008289
Cma17g00776 837 Pfam Homeodomain 17 75 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00731 Cma17g00776 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01439 Cma-Chr1:10124986 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma03g01446 Cma-Chr3:9047294 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma07g00063 Cma-Chr7:343575 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma09g00631 Cma-Chr9:2977089 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma13g00495 Cma-Chr13:5295933 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma17g00776 Cma-Chr17:6215474 Cma20g00486 Cma-Chr20:2354639 0 dispersed
Cma17g00776 Cma-Chr17:6215474 Cma08g00731 Cma-Chr8:4391594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36672 PF01852 START 2.80E-54 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00776 K09338 - csv:101213106 1663.66