Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00803 | ATGAACTCCGACAACAATTGGACTGCTCTTGTAACAGATTTCTGGCCGGAGTTCATTGCAAGCAGTTGGGGTAAAGAATTTGTCGCCGGCGGGTTCGGTGGCATCGCCGGCATTATCTCCGGCTACCCACTTGATACTCTTCGTATTAGGCAACAACAATCCGTTTCTGGGTCTGCTTTCAAAATCTTTCGTAATATCATTGCTAATGATGGCCCCGTTGGTCTTTATAGAGGCATGTCTGCTCCGTTCGCTTCTATCACTTTTCAGAGCGCGGCCGTGTTTCAAATCTACGCGGTTCTTTCTCGAGCATTCACCTCCTCGTCCACTCAATCCAACAGCGACCCTCCAAGCTACAAGGCAGTAGCAATTGGAGGATTTGGCACCGGAGCACTACAGAGCTTCTTCCTAACGCCGGTGGAGCTGGTGAAGATCCGCCTACAATTACAGACCTCAACCCAACAACCAATTTCTTCTTCTTCATCTCACAAAGGCCCATTAAGCGTCGCCAAAAGCATCTACAAAACAGAGGGATTAAGAGGCATTTACAGAGGACTTACCATAACCATGCTCCGAGACGCCCCTGCCCATGCCGTCTATTTCTGGACCTATGAGTGCATGAGAGAGCAGTTTCAACCCGGCTGCCGGAGCTCCGGCCAAGAGAGATTCAGCACGGCGTTGGTCGCCGGAGGGCTCGCCGGAGTTGCCAGCTGGATTTTTTGTTATCCGTTGGATGTGTTGAAGACAAGAATTCAAGCTCCGACACAAAGGTTGTCGCCGAGGTATAAGGGAATTGTGGATTGTCTTAGCAAGAGTGTGGGGGAAGAGGGTTATAGAGTGCTGTGGCGAGGCCTGGAGACGGCTGTTGCTAGAGCTTTTGTGGTGAATGGGGCCATTTTTAGTGCTTATGGGTTAACTTTGAGGTGTTTATTTAGTAATGGAAGCAATTAG | 948 | 49.68 | MNSDNNWTALVTDFWPEFIASSWGKEFVAGGFGGIAGIISGYPLDTLRIRQQQSVSGSAFKIFRNIIANDGPVGLYRGMSAPFASITFQSAAVFQIYAVLSRAFTSSSTQSNSDPPSYKAVAIGGFGTGALQSFFLTPVELVKIRLQLQTSTQQPISSSSSHKGPLSVAKSIYKTEGLRGIYRGLTITMLRDAPAHAVYFWTYECMREQFQPGCRSSGQERFSTALVAGGLAGVASWIFCYPLDVLKTRIQAPTQRLSPRYKGIVDCLSKSVGEEGYRVLWRGLETAVARAFVVNGAIFSAYGLTLRCLFSNGSN | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6339761 | 6341630 | - | CmaCh17G008030.1 | Cma17g00803 | 312698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00803 | 315 | PRINTS | Mitochondrial carrier protein signature | 26 | 39 | IPR002067 | GO:0055085 | |
Cma17g00803 | 315 | PRINTS | Mitochondrial carrier protein signature | 131 | 149 | IPR002067 | GO:0055085 | |
Cma17g00803 | 315 | PRINTS | Mitochondrial carrier protein signature | 182 | 200 | IPR002067 | GO:0055085 | |
Cma17g00803 | 315 | PRINTS | Mitochondrial carrier protein signature | 229 | 251 | IPR002067 | GO:0055085 | |
Cma17g00803 | 315 | Pfam | Mitochondrial carrier protein | 122 | 211 | IPR018108 | - | |
Cma17g00803 | 315 | Pfam | Mitochondrial carrier protein | 22 | 106 | IPR018108 | - | |
Cma17g00803 | 315 | Pfam | Mitochondrial carrier protein | 221 | 311 | IPR018108 | - | |
Cma17g00803 | 315 | Gene3D | Mitochondrial carrier domain | 9 | 115 | IPR023395 | - | |
Cma17g00803 | 315 | SUPERFAMILY | Mitochondrial carrier | 22 | 302 | IPR023395 | - | |
Cma17g00803 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 116 | 209 | IPR018108 | - | |
Cma17g00803 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 220 | 308 | IPR018108 | - | |
Cma17g00803 | 315 | PANTHER | CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN | 13 | 311 | - | - | |
Cma17g00803 | 315 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 24 | 103 | IPR018108 | - | |
Cma17g00803 | 315 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 13 | 311 | - | - | |
Cma17g00803 | 315 | Gene3D | Mitochondrial carrier domain | 117 | 314 | IPR023395 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00111 | Cma17g00803 | CCT | |
Cma14g01309 | Cma17g00803 | CCT | |
Cma08g00693 | Cma17g00803 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g01153 | Cma-Chr16:8867734 | Cma17g00803 | Cma-Chr17:6339761 | 4.18E-09 | dispersed | |
Cma17g00803 | Cma-Chr17:6339761 | Cma19g00240 | Cma-Chr19:1690762 | 7.84E-10 | dispersed | |
Cma01g00111 | Cma-Chr1:504236 | Cma17g00803 | Cma-Chr17:6339761 | 2.11E-143 | wgd | |
Cma14g01309 | Cma-Chr14:10305977 | Cma17g00803 | Cma-Chr17:6339761 | 5.94E-144 | wgd | |
Cma17g00803 | Cma-Chr17:6339761 | Cma08g00693 | Cma-Chr8:4261140 | 9.36E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00803 | K15109 | - | csv:101222165 | 471.855 |