Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00803 ATGAACTCCGACAACAATTGGACTGCTCTTGTAACAGATTTCTGGCCGGAGTTCATTGCAAGCAGTTGGGGTAAAGAATTTGTCGCCGGCGGGTTCGGTGGCATCGCCGGCATTATCTCCGGCTACCCACTTGATACTCTTCGTATTAGGCAACAACAATCCGTTTCTGGGTCTGCTTTCAAAATCTTTCGTAATATCATTGCTAATGATGGCCCCGTTGGTCTTTATAGAGGCATGTCTGCTCCGTTCGCTTCTATCACTTTTCAGAGCGCGGCCGTGTTTCAAATCTACGCGGTTCTTTCTCGAGCATTCACCTCCTCGTCCACTCAATCCAACAGCGACCCTCCAAGCTACAAGGCAGTAGCAATTGGAGGATTTGGCACCGGAGCACTACAGAGCTTCTTCCTAACGCCGGTGGAGCTGGTGAAGATCCGCCTACAATTACAGACCTCAACCCAACAACCAATTTCTTCTTCTTCATCTCACAAAGGCCCATTAAGCGTCGCCAAAAGCATCTACAAAACAGAGGGATTAAGAGGCATTTACAGAGGACTTACCATAACCATGCTCCGAGACGCCCCTGCCCATGCCGTCTATTTCTGGACCTATGAGTGCATGAGAGAGCAGTTTCAACCCGGCTGCCGGAGCTCCGGCCAAGAGAGATTCAGCACGGCGTTGGTCGCCGGAGGGCTCGCCGGAGTTGCCAGCTGGATTTTTTGTTATCCGTTGGATGTGTTGAAGACAAGAATTCAAGCTCCGACACAAAGGTTGTCGCCGAGGTATAAGGGAATTGTGGATTGTCTTAGCAAGAGTGTGGGGGAAGAGGGTTATAGAGTGCTGTGGCGAGGCCTGGAGACGGCTGTTGCTAGAGCTTTTGTGGTGAATGGGGCCATTTTTAGTGCTTATGGGTTAACTTTGAGGTGTTTATTTAGTAATGGAAGCAATTAG 948 49.68 MNSDNNWTALVTDFWPEFIASSWGKEFVAGGFGGIAGIISGYPLDTLRIRQQQSVSGSAFKIFRNIIANDGPVGLYRGMSAPFASITFQSAAVFQIYAVLSRAFTSSSTQSNSDPPSYKAVAIGGFGTGALQSFFLTPVELVKIRLQLQTSTQQPISSSSSHKGPLSVAKSIYKTEGLRGIYRGLTITMLRDAPAHAVYFWTYECMREQFQPGCRSSGQERFSTALVAGGLAGVASWIFCYPLDVLKTRIQAPTQRLSPRYKGIVDCLSKSVGEEGYRVLWRGLETAVARAFVVNGAIFSAYGLTLRCLFSNGSN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6339761 6341630 - CmaCh17G008030.1 Cma17g00803 312698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00803 315 PRINTS Mitochondrial carrier protein signature 26 39 IPR002067 GO:0055085
Cma17g00803 315 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Cma17g00803 315 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Cma17g00803 315 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Cma17g00803 315 Pfam Mitochondrial carrier protein 122 211 IPR018108 -
Cma17g00803 315 Pfam Mitochondrial carrier protein 22 106 IPR018108 -
Cma17g00803 315 Pfam Mitochondrial carrier protein 221 311 IPR018108 -
Cma17g00803 315 Gene3D Mitochondrial carrier domain 9 115 IPR023395 -
Cma17g00803 315 SUPERFAMILY Mitochondrial carrier 22 302 IPR023395 -
Cma17g00803 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 209 IPR018108 -
Cma17g00803 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 308 IPR018108 -
Cma17g00803 315 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 13 311 - -
Cma17g00803 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 24 103 IPR018108 -
Cma17g00803 315 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 13 311 - -
Cma17g00803 315 Gene3D Mitochondrial carrier domain 117 314 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00111 Cma17g00803 CCT
Cma14g01309 Cma17g00803 CCT
Cma08g00693 Cma17g00803 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01153 Cma-Chr16:8867734 Cma17g00803 Cma-Chr17:6339761 4.18E-09 dispersed
Cma17g00803 Cma-Chr17:6339761 Cma19g00240 Cma-Chr19:1690762 7.84E-10 dispersed
Cma01g00111 Cma-Chr1:504236 Cma17g00803 Cma-Chr17:6339761 2.11E-143 wgd
Cma14g01309 Cma-Chr14:10305977 Cma17g00803 Cma-Chr17:6339761 5.94E-144 wgd
Cma17g00803 Cma-Chr17:6339761 Cma08g00693 Cma-Chr8:4261140 9.36E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00803 K15109 - csv:101222165 471.855