Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00805 ATGTCGAACAGCCAATCAGTAGCAGATGTCGAACAGCCAATCAGTAGCAGTGCCGTGTTGCAAGACGACGGTAACTTTGTACTGCAAGAGCTGAACCAAGACGGGTTGGTGAAATGGGTGGTGTGGCAGGGCTTTGATCATCCAACGGACACTCCAGGAATGAAACTTGGAATCAATCATAAAACTGGGTATGCTTGGTCTTTAACATCTTGGAGTAGCGATGAATCTCCTACGTCAGGAGCTTTCGCTCTAGCAATGAATCCAAACAATACTAATCAAATACAGATATTGTTCAGGGGTGGCGTGTATTGGAGCAGCGGGGAGTGGAAAGACGAAGTGGTTCTACCCAAGTTGAGATTAGCAGATGGTGCCACTTTGGAGATGAACAATCGAATTTCTTACGAGATTTGCACGCTCTTCAATATGGAAGAAGGGTGCGTGTGGAGAAATCAGCAGAAAATGGCAGAGTGTGGGCGTAGTTCCTTTTGGTGGATCTCTGGACACATGGAAATGGAAGCGGCAGTGAGATTTGGAAGTCAGGAGCAAAGGAGGATTGCCGGTTTGGGTGCAAGTTATGGGTGCAAGTTATGGGTGCAAGTTACTATCGGTCTAAGCATACCTGCAATGTTTCTCCTACTCTGTTTTATGTCCTACGTCAAATGGAGGACACAAATATTGAAAGTTATCAGAAAAATGAAGAAAGGGTTCATTCGCGGGATAGGTGCTATATCCGAAGGTTTCACCATTCTAGGAATAATGACAAGACAAATTCGAGATGGCAAAAAGAATCCTGAATTACAGTTCTTCGACTTCGAAAGCATAGTTTCTGCCACAAACAATTTTGCAGAGGACTGTAAGCTGGGACAAGGTGGTTTTGGGCCTGTTTATAAGGGAGTTTTGGGTGATGGCCTAGAAGTAGCCATTAAAAGACTGTCGAAGAATTCTGGGCAAGGATTGGAGTTCAAGAATGAAACTATTTTGATTGCCAAACTTCAACACACAAATCTGGTTAGGCTGATTGGTTGCTGCATTGATAGAGAAGAGAAATTGTTGGTGTACGAGTACATGCCCAATAAAAGCCTTGACTCCTTCCTCTTTGACTCGGAGAAGAAGTTAATATTAGACTGGGACAAGCGTTTTCACATAATCCAAGGGATAGTTCAAGGACTACTCTACCTTCACTACTATTCAAGAGTACGAAAAATTCATCGAGATTTGAAAGTTAGCAATATCCTACTAGACAATGAGATGAATGCAAAAATATCAGATTTTTGTGGGTATATATCACCGGAATATGCAATGGAGGGCATTTTCTCGATAAAGTCAGACGTGTACAGTTTTGGAATATTATTGTTGGAGATCATAACAGGCAAAAAGAACTATAACAATTATGACACAGAACGGCCTTTGAATCTCATAGGATATGCGTGGGAGCTGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTCGGATTTTTGCAACTCTGATCAGAAACCAAAAGTTCTAAGATGCATCCATGTGGGTCTTTTGTGCGTACAACAAGCACCGGCAGACAGGCCGACGATGCTGGATGTTTATCTAATGATTAACAATGATTCTACTCAAGTTCTACCTCCCAAGCAGCCTGCATTCTTCATTTCTCAAAACCCAAACTCGTCGGAGCTTGAACCGGAGGTGGTCGACAGTGGGCGGCTCATACGGCCTGCACAGCCACCACAGGAAATTTGTTCATTGAGTACTATGTCAGTCTCGGTGATGGTGGCCAGGTGA 1773 43.49 MSNSQSVADVEQPISSSAVLQDDGNFVLQELNQDGLVKWVVWQGFDHPTDTPGMKLGINHKTGYAWSLTSWSSDESPTSGAFALAMNPNNTNQIQILFRGGVYWSSGEWKDEVVLPKLRLADGATLEMNNRISYEICTLFNMEEGCVWRNQQKMAECGRSSFWWISGHMEMEAAVRFGSQEQRRIAGLGASYGCKLWVQVTIGLSIPAMFLLLCFMSYVKWRTQILKVIRKMKKGFIRGIGAISEGFTILGIMTRQIRDGKKNPELQFFDFESIVSATNNFAEDCKLGQGGFGPVYKGVLGDGLEVAIKRLSKNSGQGLEFKNETILIAKLQHTNLVRLIGCCIDREEKLLVYEYMPNKSLDSFLFDSEKKLILDWDKRFHIIQGIVQGLLYLHYYSRVRKIHRDLKVSNILLDNEMNAKISDFCGYISPEYAMEGIFSIKSDVYSFGILLLEIITGKKNYNNYDTERPLNLIGYAWELWVNGRGEELIDSDFCNSDQKPKVLRCIHVGLLCVQQAPADRPTMLDVYLMINNDSTQVLPPKQPAFFISQNPNSSELEPEVVDSGRLIRPAQPPQEICSLSTMSVSVMVAR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6344767 6348181 + CmaCh17G008050.1 Cma17g00805 312700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00805 590 Pfam Protein kinase domain 283 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00805 590 Pfam Protein tyrosine and serine/threonine kinase 427 473 IPR001245 GO:0004672|GO:0006468
Cma17g00805 590 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 105 - -
Cma17g00805 590 SUPERFAMILY alpha-D-mannose-specific plant lectins 16 75 IPR036426 -
Cma17g00805 590 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 256 554 - -
Cma17g00805 590 Gene3D Phosphorylase Kinase; domain 1 252 355 - -
Cma17g00805 590 PANTHER - 256 554 - -
Cma17g00805 590 SUPERFAMILY Protein kinase-like (PK-like) 264 551 IPR011009 -
Cma17g00805 590 Gene3D Transferase(Phosphotransferase) domain 1 356 539 - -
Cma17g00805 590 ProSiteProfiles Protein kinase domain profile. 281 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00805 590 PANTHER - 17 105 - -
Cma17g00805 590 SMART serkin_6 281 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00805 590 Pfam D-mannose binding lectin 12 71 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00805 Cma-Chr17:6344767 Cma19g00948 Cma-Chr19:8421147 9.29E-09 dispersed
Cma17g00805 Cma-Chr17:6344767 Cma09g00906 Cma-Chr9:4507821 6.92E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69246 PF00069 Pkinase 3.40E-27 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00805 - - cmax:111488643 755.362