Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00816 ATGGGAATCAGTTCCAATCGAGTTGAAAACTTCGAATGTCGTGAAACGGTGTTGACGATTCCGGCGGAGGCAATGCTGCCGCCGCCGCCGCAACAGGAGGAGGAGATTCACAAAGTCTGCTTGCCGCCGAAGCAGACTACCTTTCAGAAACTCAAACACAAGCTATCGGAGGTGTTCTTCCCCGATGATCCGTTCTACAAATTCCAGAATCAATCGTGGTTAAGAAAAGTGATTTTAGGCCTTCAATCTCTGTTCCCTGTGTTTGAGTGGGGCCCTGGTTATACCCTAGCTCTTTTCAAATCTGATATCGTTTCTGGTCTCACAATCGCTAGCCTCGCTATTCCTCAGGGAATAAGTTATGCGAAACTTGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCGCTGATATATTCTATCCTTGGGAGCTCTAGACATCTTGCTGTTGGTCCAGTTTCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTATAACGAACAGCCTACTCTCTATCTTAAGTTAGCTTTCACTGCTACCTTCTTTGCTGGTGTGTTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGGTTTGTGATTGATTTTCTGTCAAAGGCTACTTTAGTTGGCTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTTCGCATTTCACCTCCAAAATGCAATTGATTCCTGTCATGTCTTCTGTTTTTCACCGCAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTTCTGATTCTTCTGGGAACAAGGCATATCAGCATCAAGAAACCAAAGCTTTTCTGGATATCAGCAGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTCTTCCTTCTCAGAGAAAAAGCTCCAGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTATCAATCCTCCATCACTGAACATGCTGTACTTTACTGGTCCTCAATTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACTGAAGGAATTGCCGTAGGAAGAACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAACAAAGAAATGATGGCCATTGGTTTTATGAACATGGCTGGATCTTTTTCTTCGTGCTATGTCACTACAGGATCGTTTTCTCGGTCCGCTGTGAATTATAATGCCGGGGCACAAACAGCAATTTCAAACGTTGTGATGTCTGCAGCTGTGCTCATAACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGACTAATTGATTACCAAGCAGCCTGTAGGCTGTGGAAAGTTGACAAGCTCGATTTTGTAGCTTGTGTTTGTTCTTTCTTCGGCATTCTTTTCATCTCGGTTCCAATGGGTCTTGCCATTGCAGTTGGAGTCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATAGTTTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACCTTGACCGATACCGTGATGCCTCGAGGGTGCCTTCGTTTCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAATTCAACATACCTGCAAGAAAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGGTAAAAGCGACGAACGATAGCCCATTGAAATGTGTAATCCTAGACATGACGGCTGTAACATCCATAGACACAAGTGGTATAGAAACAGTATGCGAGCTTAGAAAGATGTTGATGCAAAAATCACTGCAGTTTGTGCTTGCAAATCCAGGTGGAAACACGATGGAAAAACTGCATAAATCAGACGCCTTGGAGCGATTCGAGTTTAACGGTCTCTACCTCTCGGTTGGAGAAGCTGTGAAGGACATTTCTTCTCTATGGAAGAGGCTGCCATAA 1986 43.45 MGISSNRVENFECRETVLTIPAEAMLPPPPQQEEEIHKVCLPPKQTTFQKLKHKLSEVFFPDDPFYKFQNQSWLRKVILGLQSLFPVFEWGPGYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEQPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGISHFTSKMQLIPVMSSVFHRKDEWSWQTIVLGFIFLLILLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLREKAPGISVIGHLPKGINPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSFSSCYVTTGSFSRSAVNYNAGAQTAISNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGILFISVPMGLAIAVGVSVFKILLHVTRPNTIVLGNISGTQIFQNLDRYRDASRVPSFLILAIESPIYFANSTYLQERILRWVREEEERVKATNDSPLKCVILDMTAVTSIDTSGIETVCELRKMLMQKSLQFVLANPGGNTMEKLHKSDALERFEFNGLYLSVGEAVKDISSLWKRLP 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6397306 6401212 - CmaCh17G008160.1 Cma17g00816 312711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00816 661 Pfam Sulfate permease family 99 478 IPR011547 GO:0016021
Cma17g00816 661 Gene3D STAS domain 510 654 IPR036513 -
Cma17g00816 661 PANTHER SULFATE TRANSPORTER 27 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma17g00816 661 Pfam STAS domain 531 649 IPR002645 -
Cma17g00816 661 TIGRFAM sulP: sulfate permease 86 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma17g00816 661 SUPERFAMILY SpoIIaa-like 535 652 IPR036513 -
Cma17g00816 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Cma17g00816 661 PANTHER - 27 659 - -
Cma17g00816 661 ProSitePatterns SLC26A transporters signature. 128 149 IPR018045 GO:0008271|GO:0008272
Cma17g00816 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00684 Cma17g00816 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00027 Cma-Chr4:128255 Cma17g00816 Cma-Chr17:6397306 0 dispersed
Cma15g00724 Cma-Chr15:3515599 Cma17g00816 Cma-Chr17:6397306 0 dispersed
Cma17g00816 Cma-Chr17:6397306 Cma17g01201 Cma-Chr17:8290197 0 dispersed
Cma10g00603 Cma-Chr10:2788367 Cma17g00816 Cma-Chr17:6397306 0 wgd
Cma11g00593 Cma-Chr11:2835420 Cma17g00816 Cma-Chr17:6397306 0 wgd
Cma17g00816 Cma-Chr17:6397306 Cma08g00684 Cma-Chr8:4212615 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00816 K17471 - csv:101203079 1182.16