Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00823 ATGTCCATTTTTGCATATGACCTCAGATCTGTGAAGCCTCCTGAGAAAGCGTCACATAATAATAATACAGGGAGATCTCTTGCACCCTCTCCACACGTAGAAGGTGAGACAGTGTCTGTTAGGAAACATGCCTTTGCATCAAGCCTGAATTCTGCTTCTCCGCCTTTCTACCCTTCAGGGACGTCTAGTAAAAACATCCCTAAAGTGGAAAAAAGAGAAATACAAGCTGGATTTCCTGAAAAGAATATGTATGATGATAGTCGCTCCATGCCACAATCAAGTGTAATGGTGGAAGGAAAGCATGTAGTTGATGCTGTTGCCATGGATAGGCTTTACTTAAAGGATTCAACTAATCCGTCTTTAGGAAATCCTTTGTCTAAGCCATCTTCTGGTTCTTCAGTGGTCAATAATGCTCAACTTCCTCAATCTAGACCTCAGGGGAGGGGTGCAGTCATAGGATCGACCAGCTACCCTTCTGCATCACTCCATAGCCAAGTTAATAAGGTCTCTTTACCGACACAATCACATGGTGTAGCCCGAACTACTGGTCAAACTCGGGTTCAACCTGCTGTTCAGGTTCCTGTCCAGCAGTCAGGTCAGCGACCTGGTAGTGGATCTCAATCTTCATCTCCACCAAAAACGTCTACGTCAGTTAACTCACTTGAATCTGGAGATGCAGATTCTTCTTCAGAATCAAGCAAATCGAAAACTGCTTTGGTTGGAAAGGGAAAGGGTGTGACTCAGGGTATTGGTGCAGGTTCCTTTATCTATGGTGGGGCTCAGATTATGGGAACCTCTGGGAGTATGAATATTACTCACGGAGACCAGAACTTTCCTCATACTCCAGCATTTTTGCCAGTGATGCAATTTGGAGGTCAGCATCCTGGTGGTATTGGAGTTCCTGCCGTTGGCATGGCATTTCCAGGATATGTTGCCCAGTCCCAACTTGGCATGGGAAATTCAGAAATGACATGGTTACCAGTTTTGGCCGGAGCAGCTGGGGCTCTGGGAGCTACATATTGTTCGCCTTATATTGCTGTTGATGGTGCTTATCATGCTCGACCCTCAGGACAGACATCATCTGTGGGAACGTTGAGATGGCCCAAACATAGTTTTGGCAAAACTGATCTTTCCTCCTTTGCAGAACATGAAAGTGATGATGTTGGACAGCGCCAAAATAAGCCACGCAGGAATATACGACAAACGCCTCTCCCGACGTTAATCTGGGAACAGTATTTTCAGCTTGACTTCGTCATTCAACTTTATGACTTCTTGATCGAGAGTATAGAACTTTATTTAAGCATTTCTCTGTTTAAAGTCATTGCTTTTTTCGGGAATATATTGGTAGACCTCCTCACCCAGGAGGGAATGGAGATCAAAGAAAACAACAGATTTTCAAGTATCTCCTCTCCATTAATGTCATCTTCTTCGATGGCTATCCTCCTGGTTGTTCTATGCTTCGTCTTTAACGACCCGAACGCCGCGTTTGCTGTTGGACCGGGCGCTTCCTTCATTCCCAAAGATAACTTCCTCATTGACTGTGGAGCCAACAAGGAACTTGGTGCACTCCCTGATGGAAGACTGTTCCAAACTGATGAACAATCGGAACAGTACTTAGAGGCCAACGATCATCTCGTAGCAGCCGCCACACCGGAGACGAAGGCACCGTCCCCTGTCGATTTAACAGCAAGAGTATTCCTCCATGAAGCTACTTACATTTTTCAAATGGCAGAGCCAGGATGGCATTGGCTACGCCTCCATTTCTTGCCTGTTAAAAGCAATGACTTTGATCTCTTACAAGCCAAGTTTTCAGTAGTCACTGAAAAATATGTGTTGCTTCACAGCTTCAACCTCAATAATGATTCCACATTTGTTCTTAAGGAGTTTCTTCTCAATATCACTGAACCAAAACTGTCAATCACATTCTTCCCATTGAAGAATTCAGCTGCTTTTATCAATGCCATCGAGGTCGTCTCGGCTCCGATGGACTTGATAGCTGACTCGAACATGGAACTGTCTCCGGTCGGGACGATCGAGGGGCTGACGAAATATGCGTTTCAGACATTGTATAGGTTGAACATGGGAGGACCTATAATCACTCCAAGAAATGACACTATTGGGAGGACATGGGAGACAGATGAGATATACAGGACACCAAAAGCAGCTGGTAGGAGTGTCATTGTTGAGACCAATAGCATTAAATATCAAGATGGGTTGGAAGAAATTGGCATGTTAATAGCTCCTCCAAGTGTGTATGCCAGTGCAGTTCAAATGGGAGAAGCTCATACAAGTGTACCAAATTTTAATGTCACATGGAAATTGGAGGCAGATCCTTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTAAGCAAAGCACTCAATAATCTGTATTTCAACGTTTATGTAAATGGGAAGCCTGCTATAACCAACTTGGATTTGTCACACAAGCTAGGGAGTTTGGCTACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCTTGATGGTAGGGGGATTGACGGTTCAAATTGGTCCGGCTAACGTCGAAATGGGTGATACGAATGCCATTTTGAATGGCTTAGAGGTACTGAAAATAAGCAATTCTGTTAATAGTTTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTACAAATGGGAGTAGTCGTGGTACGGTAGCTGCTGTTGGGTTTGCGATGATGTTCGGGGCGTTTGTCGGGCTTGGTGCTATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAGAAGAGGAATAGTTTCTCTTCTTGGTTGCTTCCTGTACATGCTGGGGACTCTAGCTTTATGAGCAAGAGCTCATATGGATCACACAAGACCAACACTGGTTTAGGGCTTGGCAGGCTGTTTAGTTTGGCAGAGCTGCAAGAAGCCACCAAGAACTTTGATCCAAATTCAATAATTGGCGTTGGTGGGTTTGGAAATGTGTATATTGGAGTGATTGATGAAGGGACAAAAGTTGCTGTCAAGAGAGGAAATGCACAATCTGAACAAGGCATTACAGAATTCCAAACTGAAATTCATATGCTTTCAAAGCTCAGACATAGGCATTTGGTTTCTTTGATTGGTTATTGTGATGAAAACTCTGAGATGATCTTGGTTTATGAGTTCATGTCAAATGGTCCATTCAGAGATCACTTGTATGGAAAAGATGTGACTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATTGGAGCGGCTCGAGGTCTTCATTACCTTCATACAGGAACGGCTCAGGGAATCATTCACCGTGATGTCAAAACAACCAATATTTTGCTCGACGAGAGCTTCACTGCTAAAGTAGCTGATTTCGGGCTATCGAAGGATGCTGCGATGGGGCAGGGACATGTGAGTACTGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTCAGGAGGCAACAGTTGACAGAGAAATCAGATGTTTATTCGTTTGGAGTTGTTTTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCTTCTTTACCAAGAGAGCAAGTGAACTTGGCTGATTGGGCAATGCAGTGTAAGAGAAAAGGGTGTTTGGAGAAGATAATGGATCCTCTTCTAGTTGGAGCCACAAATCCTGAGTCCATGACCAAGCTTGCAAAAGCAGCAGAGAAGTGTCTTGCTGAGCATGGTGTAGATAGGCCAAGCATGGGGGATGTGCTGTGGAATTTGGAGTATGCATTACAACTTCAAGAATCGTTCTCACAAGGCAAAGGTGAAGATGAAAGCACGGTCGCAAGTGTGGCAGCTGTTGCCCCTGCGACCTCTGTCGATGCTTCGACAAATGCCCCAAACTCGATCGAGCGCCCTGTCGTGCAGGTAGAACAGAGTAGGCAACCAGTAGAGGTCGAAGACGTCGATGATGACTCGGGAAGTTCAATGTTTGCTCATTTCTCTAATCTCAATGGTAGATGA 3978 44.62 MSIFAYDLRSVKPPEKASHNNNTGRSLAPSPHVEGETVSVRKHAFASSLNSASPPFYPSGTSSKNIPKVEKREIQAGFPEKNMYDDSRSMPQSSVMVEGKHVVDAVAMDRLYLKDSTNPSLGNPLSKPSSGSSVVNNAQLPQSRPQGRGAVIGSTSYPSASLHSQVNKVSLPTQSHGVARTTGQTRVQPAVQVPVQQSGQRPGSGSQSSSPPKTSTSVNSLESGDADSSSESSKSKTALVGKGKGVTQGIGAGSFIYGGAQIMGTSGSMNITHGDQNFPHTPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVAQSQLGMGNSEMTWLPVLAGAAGALGATYCSPYIAVDGAYHARPSGQTSSVGTLRWPKHSFGKTDLSSFAEHESDDVGQRQNKPRRNIRQTPLPTLIWEQYFQLDFVIQLYDFLIESIELYLSISLFKVIAFFGNILVDLLTQEGMEIKENNRFSSISSPLMSSSSMAILLVVLCFVFNDPNAAFAVGPGASFIPKDNFLIDCGANKELGALPDGRLFQTDEQSEQYLEANDHLVAAATPETKAPSPVDLTARVFLHEATYIFQMAEPGWHWLRLHFLPVKSNDFDLLQAKFSVVTEKYVLLHSFNLNNDSTFVLKEFLLNITEPKLSITFFPLKNSAAFINAIEVVSAPMDLIADSNMELSPVGTIEGLTKYAFQTLYRLNMGGPIITPRNDTIGRTWETDEIYRTPKAAGRSVIVETNSIKYQDGLEEIGMLIAPPSVYASAVQMGEAHTSVPNFNVTWKLEADPSFGYLIRFHFCDIVSKALNNLYFNVYVNGKPAITNLDLSHKLGSLATAYYKDVVVNASLMVGGLTVQIGPANVEMGDTNAILNGLEVLKISNSVNSLDGEFGVDGKSTNGSSRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMSKSSYGSHKTNTGLGLGRLFSLAELQEATKNFDPNSIIGVGGFGNVYIGVIDEGTKVAVKRGNAQSEQGITEFQTEIHMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDVTPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDESFTAKVADFGLSKDAAMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLPREQVNLADWAMQCKRKGCLEKIMDPLLVGATNPESMTKLAKAAEKCLAEHGVDRPSMGDVLWNLEYALQLQESFSQGKGEDESTVASVAAVAPATSVDASTNAPNSIERPVVQVEQSRQPVEVEDVDDDSGSSMFAHFSNLNGR 1325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6448674 6455845 + CmaCh17G008230.1 Cma17g00823 312718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00823 1325 MobiDBLite consensus disorder prediction 1276 1294 - -
Cma17g00823 1325 Gene3D Transferase(Phosphotransferase) domain 1 1052 1272 - -
Cma17g00823 1325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Cma17g00823 1325 CDD STKc_IRAK 982 1246 - -
Cma17g00823 1325 ProSitePatterns Protein kinases ATP-binding region signature. 982 1004 IPR017441 GO:0005524
Cma17g00823 1325 Gene3D Phosphorylase Kinase; domain 1 944 1051 - -
Cma17g00823 1325 PANTHER OS07G0166700 PROTEIN 494 1296 IPR045272 GO:0004714|GO:0006468
Cma17g00823 1325 PANTHER BNAC03G60370D PROTEIN 494 1296 - -
Cma17g00823 1325 Pfam Malectin-like domain 512 867 IPR024788 -
Cma17g00823 1325 Gene3D - 684 870 - -
Cma17g00823 1325 Gene3D - 509 663 - -
Cma17g00823 1325 ProSiteProfiles Protein kinase domain profile. 976 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00823 1325 MobiDBLite consensus disorder prediction 43 65 - -
Cma17g00823 1325 MobiDBLite consensus disorder prediction 1276 1325 - -
Cma17g00823 1325 MobiDBLite consensus disorder prediction 117 237 - -
Cma17g00823 1325 MobiDBLite consensus disorder prediction 1 69 - -
Cma17g00823 1325 MobiDBLite consensus disorder prediction 117 242 - -
Cma17g00823 1325 SMART serkin_6 976 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00823 1325 Pfam Protein tyrosine and serine/threonine kinase 981 1241 IPR001245 GO:0004672|GO:0006468
Cma17g00823 1325 SUPERFAMILY Protein kinase-like (PK-like) 952 1246 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00623 Cma-Chr8:3498506 Cma17g00823 Cma-Chr17:6448674 0 dispersed
Cma08g00624 Cma-Chr8:3504747 Cma17g00823 Cma-Chr17:6448674 0 dispersed
Cma11g00125 Cma-Chr11:676663 Cma17g00823 Cma-Chr17:6448674 0 dispersed
Cma17g00823 Cma-Chr17:6448674 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma17g00823 Cma-Chr17:6448674 Cma01g01189 Cma-Chr1:8611981 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69247 PF12819 Malectin_like 8.50E-36 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00823 - - csv:101220967 1508.04