Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00828 ATGAGAAAAGAAGAAAATCTCATCAGGGAAAATATTGGAGAATTTCCTGGTAGAATTACACGTGCTCGAGCTGCTGCATTTAGTGCGTCAGGGCAGCTGCCTCCAAAAGTTCCTGCATATCAACAAGAGAGGCGGGCTGCACGAGCTAATTTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCCTTCTATTGCTAAATCATCTCGGCCATGTAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAATATTGGCTGTGAACCTTCGTACTCAAAATGTTCTAATGCAGCTAAAATTGAGACCAATAGTTGCAAGCCAACACTCAGAAACCGTATCAAGAAGTCCAAAGGAGTCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTTGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGTGGCGTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAAGCAAATGTGAAATCAAAAGCTAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCACGAGGCCCATCATCGGGTCGGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGATGTCTCAAAGTCCTTCAGAGTCCCAAAATTTTCAAAATAAAGAGAAAGTGTCGCTTATGGGGACTAGAAGCAACCTGAACATTACAGACATTGATTGTAATGACAGAGATACTCAACTGTGCACTGTCTATGCCAATGATATCCATAACAATTTACGCGTTGCTGAGCTAACCAGAAGACCGCGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTTGAGGTATCGGAGGAATACAAGTTAGTACCAGATACGCTCTACCTAACTGTATTTTTCATTGATTGGTATCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATCGCCTCGAAGTATGAAGAAATTTGTGCCCCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAGTATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATACGTTCGAGCCGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTCGCCGAATTAACACTGGTTGACTACGGTTTCTTGAACTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCGAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATACTATACTTCATATAAAGCATCAGATCTGAAAAAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACGCCAATGGTTGTCCCCTTAGCTCGATTCGCGTCAAATATCGACAAGAAAAGTTCAAAGGCGTTGCAACTTTGTCTTCCCCGAAATTACTTGATACACTATTCTGA 1512 42.46 MRKEENLIRENIGEFPGRITRARAAAFSASGQLPPKVPAYQQERRAARANLKRAASEENSCPSIAKSSRPCKRRAVLQDVSNIGCEPSYSKCSNAAKIETNSCKPTLRNRIKKSKGVSSVGVANSKVPLGLRTKGASSVGVAYSKPLDLRTQGVQANVKSKAKLKVEHSSNSEDHEAHHRVGGIKEEVTSDFRDDNWMSQSPSESQNFQNKEKVSLMGTRSNLNITDIDCNDRDTQLCTVYANDIHNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWYLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQVLKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKKTVLALQDLQLNANGCPLSSIRVKYRQEKFKGVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6501508 6507288 + CmaCh17G008280.1 Cma17g00828 312723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00828 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cma17g00828 503 Coils Coil 37 57 - -
Cma17g00828 503 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Cma17g00828 503 PANTHER CYCLIN-A2-4 51 503 - -
Cma17g00828 503 CDD CYCLIN 274 359 IPR013763 -
Cma17g00828 503 CDD CYCLIN 373 463 IPR013763 -
Cma17g00828 503 PANTHER CYCLINS 51 503 IPR039361 -
Cma17g00828 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cma17g00828 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cma17g00828 503 Gene3D - 258 371 - -
Cma17g00828 503 PIRSF Cyclin_A_B_D_E 35 502 IPR039361 -
Cma17g00828 503 SMART cyclin_7 280 364 IPR013763 -
Cma17g00828 503 SMART cyclin_7 377 465 IPR013763 -
Cma17g00828 503 Gene3D - 244 492 - -
Cma17g00828 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01526 Cma-Chr1:10671557 Cma17g00828 Cma-Chr17:6501508 1.53E-142 dispersed
Cma04g02383 Cma-Chr4:16485617 Cma17g00828 Cma-Chr17:6501508 2.26E-84 dispersed
Cma09g00477 Cma-Chr9:2120521 Cma17g00828 Cma-Chr17:6501508 3.50E-143 dispersed
Cma11g01716 Cma-Chr11:11366810 Cma17g00828 Cma-Chr17:6501508 9.57E-80 dispersed
Cma15g00658 Cma-Chr15:3138809 Cma17g00828 Cma-Chr17:6501508 6.05E-107 dispersed
Cma19g00567 Cma-Chr19:6402662 Cma17g00828 Cma-Chr17:6501508 1.29E-79 dispersed
Cma12g00306 Cma-Chr12:1560091 Cma17g00828 Cma-Chr17:6501508 4.81E-113 wgd
Cma17g00828 Cma-Chr17:6501508 Cma08g00631 Cma-Chr8:3549982 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00828 K06627 - csv:101222299 898.656