Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00850 ATGATGTGCGGCATTAGCTTGGGGACTTTCGACGTCGCGCGCAATGTGGCGACGAGGAAGTTCAGAGGATCAATTGGCAGTCATGTTGGCGACACATTTCTTCAGGCGATGCTCGTTCAAGCGTTTCGGCGGTGGATTGTTCTAGTTGGTGAAGATCCTTTAGCAGCTAACGACGGTGGGTGGATGAGACGGTGGATTAAGAACTGTTTGTTTCCTGGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATGACCAGAAACTTGGTTGTTCTTCCCAAGAACAGCCACTCTGTTCTGGGAATTTGATGATGTTCATGAAGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGGTTTTTTCTGGGGTTTCTTCAAACTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGATTTTCATTCCACCAGTAGTGGGAATTTTAGATAATCCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGTCTTCATTTCCTCACCAATATCAAACCCCTGCTATGGCTTCTCCATTCATCAATGCATCTCCTTCAATCTTCGAGAAGAGGCCAAATCCAAAACCTTATAATGGTATGCATATAGCAGCGGGATCTGGGAATTCGACGTTGAATTTGGTATACGTCAAAGCTGCACAGCAGGTGCTCGACGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAGGAAACTCAAAGGTTCCAGTGGGTTGGGTGTTGATTTCTGTAGAGAAAATGATGGGGGATGTAATGATGTGAATGGGGAGATATGTTCCGGTTCGAGGGAGTTGTCGATCGTGAATTCATTGGGTGATTTATCGCCTACCGAACGACAGGATTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACGAACATTTGCAATTATTGTCGTTGTCTTTCGACATGGTAACAGGCCGGGGGGCTGCAGAGTTCTACACCGCACTTGCACACCAGACTATTTCGTGTCACTTTCGACGCATGCAAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACATTGGGGGAGCAAGATGCTTCCCATTTTGTTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAGCACCTCAGGCAACAGAGGGCACTTCAACAGCTCGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCTGAAAGCTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGATTCGGAGAAGCTTAAGCTATCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCAAACTGGTTTATAAACGCGCGTGTTCGGCTATGGAAACCGATGGTTGAGGAGATGTACAAAGAAGAATTCGGAGACTCCGACATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCACTATTCTCTGAAGATAGAGGAGGGGACGAGTTGCACGAGCAAGTCCTCTACCGCTCGTGTTCTACCGACGACATGATTAAGTCGACTAACTTCTCGGTCGGAGGAGACGTCTCACTTGCGCTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAGTAGTACCAACAGAATGGTTGGTTCAGTGGAGCTTGAGGCACAAGATTTGCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGGCTAACCAGCTCAAATATGTTGCATGATTTTGTAGTTTGA 1797 46.13 MMCGISLGTFDVARNVATRKFRGSIGSHVGDTFLQAMLVQAFRRWIVLVGEDPLAANDGGWMRRWIKNCLFPGLSNQRDSMLGDDQKLGCSSQEQPLCSGNLMMFMKNQDPSCRDYSEVFSGVSSNYVESVGDRSNGEMIFIPPVVGILDNPNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMASPFINASPSIFEKRPNPKPYNGMHIAAGSGNSTLNLVYVKAAQQVLDEMVSIREALKELKSRKLKGSSGLGVDFCRENDGGCNDVNGEICSGSRELSIVNSLGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYEHLQLLSLSFDMVTGRGAAEFYTALAHQTISCHFRRMQDAINAQIEVTRRTLGEQDASHFVQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLSRQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSDIKSSPENASKASWNNSLFSEDRGGDELHEQVLYRSCSTDDMIKSTNFSVGGDVSLALELKHCEGDEFGMFGSSTNRMVGSVELEAQDLPCLEPERHHQCRLTSSNMLHDFVV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6603665 6606674 + CmaCh17G008500.1 Cma17g00850 312745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00850 598 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Cma17g00850 598 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 98 525 - -
Cma17g00850 598 Coils Coil 228 248 - -
Cma17g00850 598 Pfam Associated with HOX 224 362 IPR006563 -
Cma17g00850 598 SMART prehox3 206 364 IPR006563 -
Cma17g00850 598 SUPERFAMILY Homeodomain-like 413 479 IPR009057 -
Cma17g00850 598 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 525 - -
Cma17g00850 598 CDD homeodomain 412 473 IPR001356 GO:0003677
Cma17g00850 598 Gene3D - 409 486 - -
Cma17g00850 598 SMART HOX_1 412 476 IPR001356 GO:0003677
Cma17g00850 598 ProSiteProfiles 'Homeobox' domain profile. 409 472 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00850 Cma-Chr17:6603665 Cma20g00823 Cma-Chr20:3913634 4.08E-99 dispersed
Cma17g00850 Cma-Chr17:6603665 Cma08g00675 Cma-Chr8:4153128 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36679 PF07526 POX 9.90E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00850 - - cpep:111807101 1059.67