Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00888 ATGGGAGAGAGATTAGGAGGTTGGGCTATGAATCTTCTCAGTATTTTACTACCCATGTGGGTTTCCTCTTCCTTGTTCCCAATAATTGATGCCAGTCCACAGCTCCCTGGGTTTTCAATTTCTAGGACCAGACCACAATCCATTCCTCTCATTGTGGCCAAAATGGAAGCTCAATCCCCAGGAGCTGCAGATGTTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATTCTTGTAGCTTTGGTTGTTTCTTCCACACTTCTTGGAGCTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAATCTTGATGATGAAAAATGTCGAAAGAATTCGGAGGGTTCGAAAGGGGTGACGTTAAATCCCATCATATCCAGGTTTAACTCACTGAGGTTAGCTAACTTTAAAGGTTCGGTTTCGACGTTCGACTATAAACTGTTGGAAGCTGCTACTGATAGCTTCAGCAAAAACAATGTCTTGGGCCACGGTGGTTCAGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAGAATTGATAATGGAGGAGCGGATGCTGAAAGAGAATTCGAGAATGAGTTGAGCTGGTTGTGTAAAATACGACATCAAAACGTAATCAAACTCTTGGGACATTGCATTCATGGAGAAACACGGTTTCTCGTTTACGAGATGATGCATAATGGATCTTTGGAGTCTCAGTTGCACGGACCTTCTCGTGGATCGGCTTTAACTTGGCATCTCCGGATGAAGATTGCTGTCGATGTTGCAAGAGGATTGGAATATCTTCATGAGCATCGAAATCCCCCTGTCGTTCATCGGGATTTGAAATCGTCGAATATCCTTCTCGATTCGGACTTTAACGCCAAACTCTCTGACTTTGGCCTTGTTGTCAACTTGGGAGCTCAAAACAAAAACATAAAGCTCTCGGGAACGTTGGGTTATGTCGCCCCGGAATACCTTTTAGACGGTAAACTAACTGATAAGAGCGATGTGTATGCTTTTGGCGTTGTTCTTCTCGAGCTTCTAACTGGGAAAAAGCCTGTCGAGAAGACGGGACCGACTCATTCCCAATCTCTAGTTTCATGGGCGATCCCGCAGCTCAGCGACAGATCAAAGCTACCGAAAATTGTCGATCCTGTGATAAAGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCAGTGTTATGTGTACAATCAGAACCGAGCTATCGACCGTTAGTAACCGACGTTCTGCATTCCCTCATCCCTCTCGTACCAGTAGAGCTTGGAGGATCTCTTAGAATTACAGAACCCCTGCATCCAAAAGTGCGTTCATCGACCCGGTAA 1368 44.37 MGERLGGWAMNLLSILLPMWVSSSLFPIIDASPQLPGFSISRTRPQSIPLIVAKMEAQSPGAADVRVVHHQDLNKRILVALVVSSTLLGAILLFLLCFWIYRRKTSNLDDEKCRKNSEGSKGVTLNPIISRFNSLRLANFKGSVSTFDYKLLEAATDSFSKNNVLGHGGSGHVYKACFNDKLLAAVKRIDNGGADAEREFENELSWLCKIRHQNVIKLLGHCIHGETRFLVYEMMHNGSLESQLHGPSRGSALTWHLRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLVVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKTGPTHSQSLVSWAIPQLSDRSKLPKIVDPVIKDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVRSSTR 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6754756 6757648 + CmaCh17G008880.1 Cma17g00888 312783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00888 455 Pfam Protein kinase domain 160 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00888 455 Gene3D Transferase(Phosphotransferase) domain 1 235 433 - -
Cma17g00888 455 Gene3D Phosphorylase Kinase; domain 1 124 234 - -
Cma17g00888 455 SMART serkin_6 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00888 455 ProSiteProfiles Protein kinase domain profile. 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00888 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cma17g00888 455 PANTHER BNAC02G46490D PROTEIN 11 448 - -
Cma17g00888 455 CDD STKc_IRAK 165 431 - -
Cma17g00888 455 SUPERFAMILY Protein kinase-like (PK-like) 135 428 IPR011009 -
Cma17g00888 455 PANTHER OS01G0750732 PROTEIN 11 448 - -
Cma17g00888 455 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00597 Cma17g00888 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00362 Cma-Chr5:1615378 Cma17g00888 Cma-Chr17:6754756 6.35E-163 dispersed
Cma17g00888 Cma-Chr17:6754756 Cma10g01071 Cma-Chr10:6785035 5.52E-90 dispersed
Cma12g00353 Cma-Chr12:1795017 Cma17g00888 Cma-Chr17:6754756 1.74E-163 wgd
Cma17g00888 Cma-Chr17:6754756 Cma08g00597 Cma-Chr8:3392676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69248 PF00069 Pkinase 3.20E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00888 - - bhj:120085274 803.512