Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00889 | ATGGCCCGACCTCAACAGCGCTATCGTGGCGTCCGACAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAAACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGTGGTCCAAAGGCGCGAACCAACTTCCAATTCAATCCAAATGATCAACAATCGTCCTCGTCATCGTCGTCTTCCTCCAAACTTCTCTCCGCCGCGCTGATGGCGAAATTACACAAATGTCATTTAGCCTCACTTCAAATCGCCAAAAAGCACGCCGCCCACAAACAACACCCCGGATTCGAGTCCAACTACGCCGTATACGGCGTCCCTCCCCCGAGCATTTCCCAAACCACCACCAACCGGTGGCGGCAGGAAGAAACCCAAATAGAGACCAACAACAACAACATTCATCATCAGCAATGCCTTCAACCTCTTGAAGATGATGACATTGAACAAATGATACAAGAGCTATTAGACCTCGGATCATTCGAAATTATTACATGA | 546 | 51.1 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAALMAKLHKCHLASLQIAKKHAAHKQHPGFESNYAVYGVPPPSISQTTTNRWRQEETQIETNNNNIHHQQCLQPLEDDDIEQMIQELLDLGSFEIIT | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6760886 | 6761641 | - | CmaCh17G008890.1 | Cma17g00889 | 312784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00889 | 181 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 180 | - | - | |
Cma17g00889 | 181 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Cma17g00889 | 181 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 180 | - | - | |
Cma17g00889 | 181 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cma17g00889 | 181 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g00596 | Cma17g00889 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00357 | Cma-Chr5:1600464 | Cma17g00889 | Cma-Chr17:6760886 | 1.74E-60 | dispersed | |
Cma05g00358 | Cma-Chr5:1604135 | Cma17g00889 | Cma-Chr17:6760886 | 1.02E-62 | dispersed | |
Cma11g00547 | Cma-Chr11:2624261 | Cma17g00889 | Cma-Chr17:6760886 | 5.09E-31 | dispersed | |
Cma01g00172 | Cma-Chr1:766805 | Cma17g00889 | Cma-Chr17:6760886 | 2.33E-52 | wgd | |
Cma12g00356 | Cma-Chr12:1805054 | Cma17g00889 | Cma-Chr17:6760886 | 4.46E-58 | wgd | |
Cma17g00889 | Cma-Chr17:6760886 | Cma08g00596 | Cma-Chr8:3388485 | 3.47E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36682 | PF00847 | AP2 | 7.30E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00889 | - | - | csv:105436189 | 266.544 |