Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00889 ATGGCCCGACCTCAACAGCGCTATCGTGGCGTCCGACAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAAACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGTGGTCCAAAGGCGCGAACCAACTTCCAATTCAATCCAAATGATCAACAATCGTCCTCGTCATCGTCGTCTTCCTCCAAACTTCTCTCCGCCGCGCTGATGGCGAAATTACACAAATGTCATTTAGCCTCACTTCAAATCGCCAAAAAGCACGCCGCCCACAAACAACACCCCGGATTCGAGTCCAACTACGCCGTATACGGCGTCCCTCCCCCGAGCATTTCCCAAACCACCACCAACCGGTGGCGGCAGGAAGAAACCCAAATAGAGACCAACAACAACAACATTCATCATCAGCAATGCCTTCAACCTCTTGAAGATGATGACATTGAACAAATGATACAAGAGCTATTAGACCTCGGATCATTCGAAATTATTACATGA 546 51.1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAALMAKLHKCHLASLQIAKKHAAHKQHPGFESNYAVYGVPPPSISQTTTNRWRQEETQIETNNNNIHHQQCLQPLEDDDIEQMIQELLDLGSFEIIT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6760886 6761641 - CmaCh17G008890.1 Cma17g00889 312784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00889 181 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cma17g00889 181 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cma17g00889 181 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma17g00889 181 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 180 - -
Cma17g00889 181 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cma17g00889 181 PANTHER ETHYLENE RESPONSE FACTOR 1 180 - -
Cma17g00889 181 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cma17g00889 181 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cma17g00889 181 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma17g00889 181 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00596 Cma17g00889 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00357 Cma-Chr5:1600464 Cma17g00889 Cma-Chr17:6760886 1.74E-60 dispersed
Cma05g00358 Cma-Chr5:1604135 Cma17g00889 Cma-Chr17:6760886 1.02E-62 dispersed
Cma11g00547 Cma-Chr11:2624261 Cma17g00889 Cma-Chr17:6760886 5.09E-31 dispersed
Cma01g00172 Cma-Chr1:766805 Cma17g00889 Cma-Chr17:6760886 2.33E-52 wgd
Cma12g00356 Cma-Chr12:1805054 Cma17g00889 Cma-Chr17:6760886 4.46E-58 wgd
Cma17g00889 Cma-Chr17:6760886 Cma08g00596 Cma-Chr8:3388485 3.47E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36682 PF00847 AP2 7.30E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00889 - - csv:105436189 266.544