Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00896 ATGCCGGTCGACGGTTCTTCAACCACCACCCCCACCGTTTGCGTCACAGGCGCAGGCGGCTTCATTGCTTCATGGATAGTTAAGCTTCTTCTCCAGAAAGGCTATATCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACGGCCATTTGAAAGAATTTGAAGGCGCGGCGGAGCGATTCAGTTTGTATAAAGCCGATCTTCTCGATTTCGAGAGCCTTAGGGCGGCGATTAACGGATGCGATGGCGTTTTCCACACGGCGTCGCCTGTAACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGCACGAAGAATGTTATAGTCGCGGCGGCTGAAGCCAATGTCCGACGCGTGGTTTTCACTTCGTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGATGAGATCGTAGACGAGTCCTGCTGGAGCGATCTAGAGTTCTGCAAGAACACGAAGAATTGGTATTGCTATGGAAAAGCTGTCGCAGAGCAGGCGGCATGGGAGGTTGCGAAGGAGAAGGGGGTGGACTTGGTGGTGGTGAATCCGGTTCTGGTGCTGGGCCCACTGTTGCAACCCACCATTAATGCCAGCATTATCCACATACTCAAGTACTTGACTGGATCAGCTAAGACGTACGCCAATTCCGTTCAGGCGTACGTCCACGTGAAGGATGTTGCTCTTGCACATATCCTCGTGTACGAGAATCCCTCCGCCTCCGGCCGGTACCTCTGCGCCGAGAGTGTTCTCCACAGAGGGGAGATCGTTGAGATTCTTGCCAAATTGTTCCCGGAATACCCTATTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAAATTCTCCAACCAGAAGCTGAAGGACTTAGGATTGGAGTTCACTCCAGTGAAGCAGTGTCTATATGAAACCGTTAAGAACTTACAGGAGAAAGGTCATCTCCCGATCCCCACTTCTACCCAACCAGCAGACTCCATTCGAATTCAATCTTAA 1017 51.92 MPVDGSSTTTPTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNGHLKEFEGAAERFSLYKADLLDFESLRAAINGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIVAAAEANVRRVVFTSSIGAVYMDPNRGPDEIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQPTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYENPSASGRYLCAESVLHRGEIVEILAKLFPEYPIPTKCSDEVNPRKKAYKFSNQKLKDLGLEFTPVKQCLYETVKNLQEKGHLPIPTSTQPADSIRIQS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6791765 6795419 + CmaCh17G008960.1 Cma17g00896 312791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00896 338 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Cma17g00896 338 CDD FR_SDR_e 13 300 - -
Cma17g00896 338 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 326 - -
Cma17g00896 338 Gene3D - 4 337 - -
Cma17g00896 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 316 IPR036291 -
Cma17g00896 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01058 Cma-Chr14:5639941 Cma17g00896 Cma-Chr17:6791765 0 dispersed
Cma14g01059 Cma-Chr14:5644557 Cma17g00896 Cma-Chr17:6791765 4.45E-180 dispersed
Cma17g00896 Cma-Chr17:6791765 Cma18g01024 Cma-Chr18:8545289 2.74E-84 dispersed
Cma01g00182 Cma-Chr1:802536 Cma17g00896 Cma-Chr17:6791765 8.80E-180 wgd
Cma14g01057 Cma-Chr14:5613286 Cma17g00896 Cma-Chr17:6791765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00896 K09753 - csv:101213412 615.535