Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00896 | ATGCCGGTCGACGGTTCTTCAACCACCACCCCCACCGTTTGCGTCACAGGCGCAGGCGGCTTCATTGCTTCATGGATAGTTAAGCTTCTTCTCCAGAAAGGCTATATCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACGGCCATTTGAAAGAATTTGAAGGCGCGGCGGAGCGATTCAGTTTGTATAAAGCCGATCTTCTCGATTTCGAGAGCCTTAGGGCGGCGATTAACGGATGCGATGGCGTTTTCCACACGGCGTCGCCTGTAACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGCACGAAGAATGTTATAGTCGCGGCGGCTGAAGCCAATGTCCGACGCGTGGTTTTCACTTCGTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGATGAGATCGTAGACGAGTCCTGCTGGAGCGATCTAGAGTTCTGCAAGAACACGAAGAATTGGTATTGCTATGGAAAAGCTGTCGCAGAGCAGGCGGCATGGGAGGTTGCGAAGGAGAAGGGGGTGGACTTGGTGGTGGTGAATCCGGTTCTGGTGCTGGGCCCACTGTTGCAACCCACCATTAATGCCAGCATTATCCACATACTCAAGTACTTGACTGGATCAGCTAAGACGTACGCCAATTCCGTTCAGGCGTACGTCCACGTGAAGGATGTTGCTCTTGCACATATCCTCGTGTACGAGAATCCCTCCGCCTCCGGCCGGTACCTCTGCGCCGAGAGTGTTCTCCACAGAGGGGAGATCGTTGAGATTCTTGCCAAATTGTTCCCGGAATACCCTATTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAAATTCTCCAACCAGAAGCTGAAGGACTTAGGATTGGAGTTCACTCCAGTGAAGCAGTGTCTATATGAAACCGTTAAGAACTTACAGGAGAAAGGTCATCTCCCGATCCCCACTTCTACCCAACCAGCAGACTCCATTCGAATTCAATCTTAA | 1017 | 51.92 | MPVDGSSTTTPTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNGHLKEFEGAAERFSLYKADLLDFESLRAAINGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIVAAAEANVRRVVFTSSIGAVYMDPNRGPDEIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQPTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYENPSASGRYLCAESVLHRGEIVEILAKLFPEYPIPTKCSDEVNPRKKAYKFSNQKLKDLGLEFTPVKQCLYETVKNLQEKGHLPIPTSTQPADSIRIQS | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6791765 | 6795419 | + | CmaCh17G008960.1 | Cma17g00896 | 312791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00896 | 338 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - | |
Cma17g00896 | 338 | CDD | FR_SDR_e | 13 | 300 | - | - | |
Cma17g00896 | 338 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 8 | 326 | - | - | |
Cma17g00896 | 338 | Gene3D | - | 4 | 337 | - | - | |
Cma17g00896 | 338 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 9 | 316 | IPR036291 | - | |
Cma17g00896 | 338 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 8 | 326 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01058 | Cma-Chr14:5639941 | Cma17g00896 | Cma-Chr17:6791765 | 0 | dispersed | |
Cma14g01059 | Cma-Chr14:5644557 | Cma17g00896 | Cma-Chr17:6791765 | 4.45E-180 | dispersed | |
Cma17g00896 | Cma-Chr17:6791765 | Cma18g01024 | Cma-Chr18:8545289 | 2.74E-84 | dispersed | |
Cma01g00182 | Cma-Chr1:802536 | Cma17g00896 | Cma-Chr17:6791765 | 8.80E-180 | wgd | |
Cma14g01057 | Cma-Chr14:5613286 | Cma17g00896 | Cma-Chr17:6791765 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00896 | K09753 | - | csv:101213412 | 615.535 |