Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00902 ATGAATCGCCCTGAGATGGTTCCGAAAGAATGTTCGAAGCGATTGGCGGCTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGACGATGGTGAGAATGAAAGTCTTCGGTATGGGGTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTTGACACATCAACATCTTTCTTTGGTGTTTACGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTCCATCAACAGGTGCTCAAACATGAATCATACATGGCTGGTGATTTAGGAACTTCAGTACAGAAGGCCTTTCTTAGAATGGATGAGATGATGTGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTGCGGAAGCTAACAATCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCCAATGCTGGGGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAACCTATCTAAAGATCACAAGCCTGATCTTGAGGCAGAGAAGGACAGAATTTTGAAAGCCGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGGGCTATAGGTGACATGGAGTTTAAGCAGAATGAAACTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAACTGTTGAGCTTTGCGAGGATGACGAATTTCTTGTTATTGCATGCGATGGCATCTGGGATTGTATGTCCAGCCAACAACTGGTTGATTACATTGGAGATCAACTTAAAACGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCTCAGTTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAATTTAAGAAGCCCATCCACAACCCAAATGCCGCTTCTACTTCTGCTGCGGAGCTGCCTTCAACGTCCAATCAACCGCCGTCTGATCCGAACGAAGGCCCTTCTAAAGCTGAATAG 1152 45.4 MNRPEMVPKECSKRLAAWKMGIYLSSPKTEKASDDGENESLRYGVSSMQGWRATMEDAHAACLDFDTSTSFFGVYDGHGGKAVSKFCAKYLHQQVLKHESYMAGDLGTSVQKAFLRMDEMMCGQRGWRELAILGDKMDKISGMIEGFIWSPKSAEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEAEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNETMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSVGGEGCDNMTMILVQFKKPIHNPNAASTSAAELPSTSNQPPSDPNEGPSKAE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6820003 6827140 - CmaCh17G009020.1 Cma17g00902 312797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00902 383 MobiDBLite consensus disorder prediction 355 383 - -
Cma17g00902 383 CDD PP2Cc 42 347 IPR001932 -
Cma17g00902 383 MobiDBLite consensus disorder prediction 355 376 - -
Cma17g00902 383 Pfam Protein phosphatase 2C 175 331 IPR001932 -
Cma17g00902 383 Pfam Protein phosphatase 2C 42 121 IPR001932 -
Cma17g00902 383 Gene3D - 19 348 IPR036457 -
Cma17g00902 383 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 17 360 - -
Cma17g00902 383 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Cma17g00902 383 ProSiteProfiles PPM-type phosphatase domain profile. 42 347 IPR001932 -
Cma17g00902 383 PANTHER PROTEIN PHOSPHATASE 2C 17 360 IPR015655 GO:0004722|GO:0006470
Cma17g00902 383 SMART PP2C_4 32 345 IPR001932 -
Cma17g00902 383 SUPERFAMILY PP2C-like 22 348 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01674 Cma-Chr1:11423158 Cma17g00902 Cma-Chr17:6820003 0 dispersed
Cma17g00902 Cma-Chr17:6820003 Cma09g00041 Cma-Chr9:172537 3.08E-38 dispersed
Cma17g00902 Cma-Chr17:6820003 Cma08g00588 Cma-Chr8:3350272 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00902 K17499 - csv:101214132 685.256