Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00903 ATGATTATCACCGTGAAGGATTCGACGATGGTGACTCCGGCGGAGGAGACGCCGCGCCGGACTCTCTGGAACTCGAACGTCGATCTGGTGATACCGAGTATACACACGCCGAGCGTCTACTTCTACCGCCCGACCGGCGCCTCCAATTTCTTCGACGGTCAGGTTCTCAAGGAAGGCCTAAGCAAGGCGCTGGTGCCGTTTTATCCAATGGCCGGACGATTGAGACGCGATGAAGACGGTCGTATCGAGATCTACTGTAATGCTGAAGGTGTGCTTCTTGTCGAGGCTGAGACCACGGCGGTTATCGACGATTTCGGTGATTTCGCCCCGACGTTACAGCTTCGGCAACTTATTCCGGCCGTCGATTACTCCGGCGGAATCGAATCGTATCCTTTGCTGGTGTTACAGGTGACACACTTCAAATGCGGCGGCGTTTCACTGGGCGTAGGAATGCAGCACCATTTAGCGGACGGCTTCGCCGGTCTCCACTTTGTGAATACCTGGTCCGACATGTCGCGTGGCCTCGACCTTAAGCTTCAGCCCTTCATCGACCGGACCCTACTCAGAGCGCGGGACCCACCTCAACCGGCATTCCGTCACGTCGAATACGAACCGGCTCCGCCCATGAAAACTCCGGTCCAGCCCAACTCGGAAGGAACCACCGTCTCTGTATTCAAATTCACCCGCGAGCAGCTCAATCTACTCAAAGCCAAATCCAAAGAAAATGGCAATACTATCAACTACAGTTCATATGAGATGCTCTCCGGCCACGTCTGGCGCTGCACGTGCAAGGCGCGTGACCTTCCCGAGGATCAGGAGACTAAGCTCTACATTGCCACCGACGGCCGTGCCCGGTTGCGCCCGCCGCTTCCCAACGGCTACTTCGGCAACGTTATCTTCACAACTACGCCGCTCGCCGTCGCCGGTGAACTAATGTCGAACCCGACGTGGTTCGCCGCCGGCAAGATCCACGACGCCTTGGTTCGGATGGACAACGATTATTTGAGATCGGCTTTGGACTATCTCGAAATGCAGCCGGACTTATCGGCGTTGGTCCGTGGTGCTCATACTTTCCGTTGCCCCAATTTGGGAATCACTAGCTGGGTTCGGCTGCCTATTCACGACGCCGATTTTGGGTGGGGCCGGCCGATTTTTATGGGCCCCGGCGGAATCGCGTACGAGGGATTGTCGTTTATAATCCCGAGTGCGTCCGACGATGGCAGCTTGTCAGTAGCGATTTCGCTGCAGACGCCACATATGAAGGTGTTTGAGAAGCTGTTCTTTAATCTTTAA 1293 55.76 MIITVKDSTMVTPAEETPRRTLWNSNVDLVIPSIHTPSVYFYRPTGASNFFDGQVLKEGLSKALVPFYPMAGRLRRDEDGRIEIYCNAEGVLLVEAETTAVIDDFGDFAPTLQLRQLIPAVDYSGGIESYPLLVLQVTHFKCGGVSLGVGMQHHLADGFAGLHFVNTWSDMSRGLDLKLQPFIDRTLLRARDPPQPAFRHVEYEPAPPMKTPVQPNSEGTTVSVFKFTREQLNLLKAKSKENGNTINYSSYEMLSGHVWRCTCKARDLPEDQETKLYIATDGRARLRPPLPNGYFGNVIFTTTPLAVAGELMSNPTWFAAGKIHDALVRMDNDYLRSALDYLEMQPDLSALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASDDGSLSVAISLQTPHMKVFEKLFFNL 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6827140 6829793 + CmaCh17G009030.1 Cma17g00903 312798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00903 430 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 429 - -
Cma17g00903 430 Gene3D - 210 430 IPR023213 -
Cma17g00903 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 429 - -
Cma17g00903 430 Pfam Transferase family 2 426 - -
Cma17g00903 430 Gene3D - 1 205 IPR023213 -
Cma17g00903 430 MobiDBLite consensus disorder prediction 198 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00044 Cma-Chr10:162694 Cma17g00903 Cma-Chr17:6827140 1.83E-93 dispersed
Cma12g00992 Cma-Chr12:7896320 Cma17g00903 Cma-Chr17:6827140 1.78E-59 dispersed
Cma16g00110 Cma-Chr16:498968 Cma17g00903 Cma-Chr17:6827140 1.34E-49 dispersed
Cma17g00903 Cma-Chr17:6827140 Cma11g00591 Cma-Chr11:2829655 1.26E-52 dispersed
Cma01g01476 Cma-Chr1:10405178 Cma17g00903 Cma-Chr17:6827140 5.12E-19 transposed
Cma05g01195 Cma-Chr5:9248668 Cma17g00903 Cma-Chr17:6827140 9.04E-18 transposed
Cma16g00514 Cma-Chr16:2646097 Cma17g00903 Cma-Chr17:6827140 5.79E-29 transposed
Cma17g00903 Cma-Chr17:6827140 Cma08g00587 Cma-Chr8:3346101 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00903 K13065 - csv:101214857 827.78