Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00910 ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTCCACTCCATCACAGCCAGAAGAAGGTACTCAAGCGGACGCGTAAGTCCACTCCTCGAGATTCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGTGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCACTATTAACGTACCAAGACGAGATTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGAAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTTAGCCGTTATATCAAATGCCTCCGTCCTGAGGAACAAGATATCCCAAACAATAATAACTGTCCACCAAGCCCTAACGCCGGCAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGCTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGGCGACGGTGAGTCCTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCAAAATTTAATGATATAATAGAAAGAAACCCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCCGATGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAAATTTTCACTACGCACTCGATGCTTAA 1086 48.62 MAKISHPPHKNSISTTANSQSSPLHHSQKKVLKRTRKSTPRDSPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLTYQDEIKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPEEQDIPNNNNCPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPGDGESSSSNTLELLLHSSKFNDIIERNPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSNFHYALDA 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6863250 6867547 - CmaCh17G009100.1 Cma17g00910 312805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00910 361 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 MobiDBLite consensus disorder prediction 296 316 - -
Cma17g00910 361 CDD AP2 49 116 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 MobiDBLite consensus disorder prediction 222 243 - -
Cma17g00910 361 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Cma17g00910 361 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Cma17g00910 361 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Cma17g00910 361 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677
Cma17g00910 361 MobiDBLite consensus disorder prediction 256 280 - -
Cma17g00910 361 MobiDBLite consensus disorder prediction 1 51 - -
Cma17g00910 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 344 - -
Cma17g00910 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 344 - -
Cma17g00910 361 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 MobiDBLite consensus disorder prediction 8 26 - -
Cma17g00910 361 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Cma17g00910 361 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00603 Cma-Chr14:3000914 Cma17g00910 Cma-Chr17:6863250 3.02E-90 dispersed
Cma17g00910 Cma-Chr17:6863250 Cma01g01756 Cma-Chr1:11818737 5.36E-10 dispersed
Cma18g00971 Cma-Chr18:8227470 Cma17g00910 Cma-Chr17:6863250 2.22E-86 dispersed
Cma10g00446 Cma-Chr10:2030666 Cma17g00910 Cma-Chr17:6863250 7.31E-138 transposed
Cma17g00910 Cma-Chr17:6863250 Cma08g00580 Cma-Chr8:3318157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36683 PF00847 AP2 2.40E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00910 K09285 - csv:101206499 580.867