Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00916 ATGGCGGTTGAATCAAACCAAACTCATGAGTTCATTTTCCGATCAAAGCTTCCCGATATTCACATTCCCAATCATCTTCCACTCCATGAATACGTTTTCCAAAACATGTCCAAATTTGGCTCACGTCCCTGTTTGATCAACGGCGCCACCGGCGACATTTACTCATACCACGACGTTCAGCTAATGTCCCGTCGTGTCGCTGCTGGTTTACACAATCTTGGAATTAAAAAGGGTGATGTCGTCATGAATTTACTTCCCAATTCCCCGGAGTTTGTCTTTACCTTCCTCGGCGCCTCGTACTGTGGAGCTGTTATGACGGCGGCGAACCCCTTTTACACGGCGGTGGAAATCGCCAAACAGGCCAAAGCCGCCAATGCAAAATTGATTGTGACGATGGCTTGCTTTTACGACCGGGTTAAGGATTTGGCGGAAAATGGAGTGAAAATTGTCTGTGTTGATTTTGCTGTTGAGGGTTGTCTGCATTACTCTGTTTTGAGTGGGGCGGATGAATCCCACGTGCCGCCGGTGGAGTTTGCCGCAGACGATGTGGTGGCGCTGCCGTATTCCTCCGGCACTACTGGTTTGCCGAAGGGAGTTATGCTAACGCATAAAGGGTTAATCACAAGCGTTGCTCAACAAATCGACGGCCAAAATCCGAATCTCTATTATCACGGCGGTGATGTTATCCTCTGTGTACTGCCGTTCTTCCACATCTATTCACTGAACTCGATTTTACTGTGTGGCCTACGCGCCGGCGCTGCGATTTTGATAATGCAGAAATTCGAGATCGTTTCGCTTTTGGAATTGATTGAGAAACACAAAGTTTCAATCATGCCGATTGTTCCGCCCATTTTCTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATATGACGTGTCATCGGTGAGGGTTTTGAAATCCGGTGGAGCACCGTTGGGGAAGGAGCTGGAAGACGCTGTGAGAGAGAAATTTCCAACGGCGGTTCTCGGGCAGGGATATGGAATGACCGAGGCCGGTCCGGTTTTGACAATGAGTTTAGCTTTTGCGAAAGAGCCGTTTGCAGTGAAAGCCGGCGCCTGTGGGACAGTGGTCCGAAATGCAGAAATGAAAATCGTTGACCCAGAAACCGGCGCCTCGTTGCCGGCGAACTCCGCCGGAGAGATTTGTATTAGAGGGGAACAGATCATGAAGGGATATTTGAATGATTTGGAGTCCACGAAGAGGACAGTTGACAAAGAAGGATGGCTTCACACCGGCGACATCGGCTTCATCGACGACGACGACGAGCTGTTCATAGTGGATCGGCTTAAGGAGCTTATCAAATTCAAGGCCTTTCAGGTGGCGCCAGCCGAGCTTGAGTCGCTTCTTATCACTCACCCCAAACTCTCCGACGCGGCGGTCATTGGTATGCCGGACGAGCAGGCCGGAGAAGTGCCAGTGGCGTTTGTGGTGAAGGCGAACGGCGGCGCAATAACAGAGGAAGACGTAAAGCAATTCATATCAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTCTTCGTCAATGCCATTCCAAAGGCGCCATCTGGCAAAATCCTGAGAAAAGAACTCAGAGCAAAACTTGCTTCTGGGGCTTTCAATTAA 1629 49.54 MAVESNQTHEFIFRSKLPDIHIPNHLPLHEYVFQNMSKFGSRPCLINGATGDIYSYHDVQLMSRRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYCGAVMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHYSVLSGADESHVPPVEFAADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYHGGDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLELIEKHKVSIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPTAVLGQGYGMTEAGPVLTMSLAFAKEPFAVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGEQIMKGYLNDLESTKRTVDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKAFQVAPAELESLLITHPKLSDAAVIGMPDEQAGEVPVAFVVKANGGAITEEDVKQFISKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASGAFN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6899532 6901451 + CmaCh17G009160.1 Cma17g00916 312811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00916 542 Gene3D - 3 436 IPR042099 -
Cma17g00916 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Cma17g00916 542 Pfam AMP-binding enzyme 34 442 IPR000873 -
Cma17g00916 542 SUPERFAMILY Acetyl-CoA synthetase-like 9 538 - -
Cma17g00916 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cma17g00916 542 Gene3D - 437 538 IPR045851 -
Cma17g00916 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cma17g00916 542 CDD 4CL 22 532 - -
Cma17g00916 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00571 Cma-Chr8:3258050 Cma17g00916 Cma-Chr17:6899532 0 dispersed
Cma17g00916 Cma-Chr17:6899532 Cma01g00515 Cma-Chr1:2648430 1.77E-141 dispersed
Cma01g00200 Cma-Chr1:910054 Cma17g00916 Cma-Chr17:6899532 0 wgd
Cma14g01039 Cma-Chr14:5470037 Cma17g00916 Cma-Chr17:6899532 0 wgd
Cma17g00916 Cma-Chr17:6899532 Cma08g00570 Cma-Chr8:3253231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00916 K01904 - csv:101218361 998.038