Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00917 ATGGGGACTCCTGTGAATATCGTTGTCGGATCACATGTTTGGGTTGAGGAGCCTGAGGATGCTTGGATTGAAGGTCAAGTTACAGGAATCAATGGAAAAAACGCCACCATATTCACTACCAATGAAAAATCCATTGTGGCAGAAATTTCGCGTATATATCCGAAAGACACGGAGGCGCCGCCGGCTGGGGTGGACGACATGACGAAATTAGCGTACCTTCACGAACCTGGAGTTCTGCATAACCTAGCTTGTCGGTTTTCTCTCAATGAGATTTACACATACACCGGGAATATTCTAATTGCGGTGAATCCTTTCCGGAGACTGCCACATTTGTATGATATTCACATGATGGAGCAGTATAAAGGAGCTCCTTTCGGCGAGCTTAGCCCACATCTTTTCGCCGTTGCTGATACTTGCTATAGATCGATGATCAACGAGCAAGGAAGTCAATCGATATTAGTGAGCGGAGAGAGTGGTGCTGGTAAGACTGAGACAACGAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCAGACACTGAAGGAAGAACAGTCGAACAACAAGTTCTGGAGTCCAACCCTGTACTGGAAGCATTTGGGAATGCCAAAACTGTTAAAAACAACAACTCAAGTCGTTTTGGAAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGAGCTGCCATTCGTACGTACCTTCTCGAACGGTCTCGTGTTTGCCAAGTCTCGGACCCTGAGAGAAACTATCATTGTTTTTACATGCTGTGTGCTGCACCACCGGAAGATGTCAAGAAATACAAGTTAGGAGATCCAAGGACATTTCATTATCTCAATCAAACGAATTGTTATGAAGTCGCGAATGTTGATGATTCGAGAGAGTACTTAGAGACGAGAAACGCGATGGATGTTGTCGGAATCAGCGAGGATGAACAGGATGCTATATTTCGTGTTGTAGCTGCAATACTGCATCTAGGAAACATTGACTTCATGAAAGGGAAGGAATTTGACTCCTCCAAAGTCAAAGACGAGAAGTCAAATTACCATCTTGAAACAGCAGCAGAGCTACTCATGTGTGATGCAAAGGCACTGGAGCATTCGCTCTGCCAACGGGTCATCGTGACTCCTGATGGCAACATTACGAAGCCCTTAGACCCCGATGCAGCGGCCTTGAGTCGTGATGCGTTGGCGAAAACCGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGCTCAATTGGCCAAGATCCTAATGCAGCCAGCTTAATTGGGGTCCTTGATATCTATGGGTTTGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCACGTTTTCAAGATGGAACAAGAGGAGTACACGAAAGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAAGATGTCCTTGATCTTATTGAGAAGAAACCTGGAGGCATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACATGAAACATTTGCTCAAAAGATGTATCAGACATATAAAGGACATAAGCGATTCAGCAAGCCAAAACTCGCTCGAACCGACTTCACGATCAATCATTATGCCGGAGATGTTACATACCAAGCAGATCACTTTCTAGATAAAAATAAGGACTACGTAGTAGCAGAACATCAGGCTCTTCTGGATGCCTCCAAATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAGAGCTCAAAGCAATCCAAGTTTTCCTCTATCGGTACTCGGTTCAAGCAACAACTGCAAGCTCTCATGGAAACATTGAATACTACAGAGCCACATTATATTAGATGTGTAAAGCCCAACACAGTTTTGAAGCCTGGAATCTTTGAGAACTTCAACGTCTTGAACCAGTTGAGATGTGGGGGAGTGCTCGAGGCAATTCGAATAAGCTGTGCAGGATATCCAACCAAAAGAACATTTGACGAGTTCCTCGATCGTTTCGGAATGCTTGCTCCAGATATCTCAGATGGGTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGGAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGATGGATGCACGACGAACCGAAATACTGGCCAGTGCTATCCGACGCATCCAACGCCAAATCCGAACCCATCTAACTCGAAAAGAGTTCATCGCCCTGAGGAAAGCTACCATTCATATGCAGAAACTTTGGAGAGGGCAGCTTGCTCGTAAGCTGTATGAAGAACTGAGAAGAGAAGCAGCTTCAATCCGTATACAAAAGCATGCTCGAGCTCACGCCGATAGAAAATCTTACAAAAAGTTACTTGAATCAGCTATAGTTATTCAAACTGGTATGCGTGGAATGAGAGCTAGAAATGAGTACAGACACAGAAGAAGAACTAAGGCAGCTATCATTATTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCATCGGATAGCAACTCTTGCTCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGATGGAGCTAAGAAAATTAAGGATGGCTGCAAGAGAAACAGGGGCACTCAAGGAGGCTAAGGATAAATTGGAGAAGCGTGTCGAGGAGCTAACGTGGCGCCTAGAGTTTGAGAAGCACTTGAGGATGGATGTTGAAGAGGCCAAGGGACAAGAGGTTGCAAAATTACTAAGTACTTTGGAAGAAATGCAAGGGCAGCTGAATGAAGCCAATGCTGCAATCATACGTGAGAGAGAAGCAGCAAAACTGGCTATAGAACAAGCTCCACCAGTCATTAAGGAAGTACCTGTGGTTGACGAGACCAAGCTGGAAATGCTGAGGAACCATAATGAAGAACTTGAGTGGGAGGTTGGAGAGCTGAAGAAGAAAATTGATGAATTTGAAGTAAAGTATGGTGAAGTGGAAATGGAGAGTAAAGCTAGACTCAAGGAGGCTGAAGAGGCACAATTGAATTCATTGCAACTTCAAGAGTCTATTGAGAGATTGGAATCAAATTTATCTAGCCTTGAGTCTGAGAACCAGGTGCTGCGCCAGCAGGCTTTGGTTGCAGCTGACAACGAGTCTCTCTCTGAAGAACTGCAAGCCCTCAAGAGTAAGATCGGAAGTCTAGAGGCAGAGAATGAAGCTCTCCGCAACCGGACGGTGGCCGTCGAGCACATATCTGTGGCTACTAGGGGCCTTGCAGAAAGCAAGGAACCATCTACTGCTCCTGTCCTAGCTAAACAAGGATCACTTACTGAGAAGCAACAGGAAAATCACGACGTCCTGCTCAAGTGCTTAGCAGAGGACAAGCGTTTCGACAAGGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATATTTTGAAGCTGAGAGGACAAATATATTCGACAGAATTATCCACATAATCAGATCTTCTATAGAGAGTCAGGAAAGTACCAGTGATCTTGCATATTGGCTTTCAACCACTTCCACACTTCTCTGTCTTCTTCAAAGTTCACTCAAAGCAACCAACACAAGCACAGTAGCTTCACATCGAAACCGAGCTTCTCCCGCGTCCTTATTTGGTCGTATGGCATATGGTCTTCGATCGTCGTCAGTGGGGCTGGGAGTTTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAATCCAAAGTTGAAGCCAAGTACCCAGCGCTGCTTTTCAAGCAACATCTGGCTGCATGCGTTGAAAAACTGTTTGGGATGATACGTGATCATTTGAAGAAAGAAATCAGCCCTTTCTTGCATCTATGTATACAGGCACCAAGATCAGCGAGGGCCAGATCAATAAGAGGGCCATCTAAAAACATCCATTCAAACATTGTTGCAAAGCAGCAGGCATCAAGTATTCACTGGCAAAGCATTGTTCATAAGCTAAACCAGACATTGGCTATAATGTCCGAAAACCATGTTCCCTCCATGATCATCAAAAGCATCTTCTTCCAAGTTTTCTCATTCATAAACGTCCAGCTTTTCAATAGCTTGTTGCTACGACGCGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTGAAGTTGGGTCTGCAGGAGTTGGAGCAATGGTGCCACAAAGCTACTGATACGTATGCTGGCTCTTCCTGGGATGAACTTCAACATATCAGACAAGCATTAGGATTTCTGGTGTTACTTCAGAAGTCCCAGAAAAGTTTGAATGAGATCACGGATGAACTTTGCCCGATTCTGAGCATCCCACAAATTTATCGCATCGGCACGATGTTCTGGGACGACAAATATGGAACTCAGGGATTATCTTCTGATATCATTGGAAAAATGAGAGTCCTTCTAGCAGAAGATTCCATCAACATCCCAAACAACTCTTTCCTTCTTGATGTCGATTCAAGCATACCATTCTCAATGGAAGAAATATTCCGATCCTTTGCTGAGGACGGCGGGGTTAACCTGTCCAACGTCGACCCGCCGCCACTTATGAGACAAAAATCAGATTTCCATTTTCTTCTGCAGCAGCAAATGACTGAATGA 4629 44.2 MGTPVNIVVGSHVWVEEPEDAWIEGQVTGINGKNATIFTTNEKSIVAEISRIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAPFGELSPHLFAVADTCYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRTFHYLNQTNCYEVANVDDSREYLETRNAMDVVGISEDEQDAIFRVVAAILHLGNIDFMKGKEFDSSKVKDEKSNYHLETAAELLMCDAKALEHSLCQRVIVTPDGNITKPLDPDAAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADHFLDKNKDYVVAEHQALLDASKCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAEMDARRTEILASAIRRIQRQIRTHLTRKEFIALRKATIHMQKLWRGQLARKLYEELRREAASIRIQKHARAHADRKSYKKLLESAIVIQTGMRGMRARNEYRHRRRTKAAIIIQTEWRRASAISAYKQHRIATLALQCLWRSKVARMELRKLRMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLLSTLEEMQGQLNEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEWEVGELKKKIDEFEVKYGEVEMESKARLKEAEEAQLNSLQLQESIERLESNLSSLESENQVLRQQALVAADNESLSEELQALKSKIGSLEAENEALRNRTVAVEHISVATRGLAESKEPSTAPVLAKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRYFEAERTNIFDRIIHIIRSSIESQESTSDLAYWLSTTSTLLCLLQSSLKATNTSTVASHRNRASPASLFGRMAYGLRSSSVGLGVSSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACVEKLFGMIRDHLKKEISPFLHLCIQAPRSARARSIRGPSKNIHSNIVAKQQASSIHWQSIVHKLNQTLAIMSENHVPSMIIKSIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCHKATDTYAGSSWDELQHIRQALGFLVLLQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSSDIIGKMRVLLAEDSINIPNNSFLLDVDSSIPFSMEEIFRSFAEDGGVNLSNVDPPPLMRQKSDFHFLLQQQMTE 1542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6904312 6916368 + CmaCh17G009170.1 Cma17g00917 312812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00917 1542 Coils Coil 876 910 - -
Cma17g00917 1542 SMART DIL_2 1355 1462 IPR002710 -
Cma17g00917 1542 SMART iq_5 781 803 IPR000048 GO:0005515
Cma17g00917 1542 SMART iq_5 852 874 IPR000048 GO:0005515
Cma17g00917 1542 SMART iq_5 756 778 IPR000048 GO:0005515
Cma17g00917 1542 SMART iq_5 804 826 IPR000048 GO:0005515
Cma17g00917 1542 SMART iq_5 733 755 IPR000048 GO:0005515
Cma17g00917 1542 SMART iq_5 829 851 IPR000048 GO:0005515
Cma17g00917 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Cma17g00917 1542 Coils Coil 922 949 - -
Cma17g00917 1542 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 Gene3D - 252 310 - -
Cma17g00917 1542 Gene3D - 784 834 - -
Cma17g00917 1542 Gene3D - 733 783 - -
Cma17g00917 1542 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Cma17g00917 1542 PANTHER MYOSIN-12 19 1534 - -
Cma17g00917 1542 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Cma17g00917 1542 Coils Coil 972 1048 - -
Cma17g00917 1542 Coils Coil 1055 1082 - -
Cma17g00917 1542 CDD MYSc_Myo11 76 719 IPR036018 -
Cma17g00917 1542 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 Gene3D - 667 729 - -
Cma17g00917 1542 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Cma17g00917 1542 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Cma17g00917 1542 Pfam DIL domain 1356 1459 IPR002710 -
Cma17g00917 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Cma17g00917 1542 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cma17g00917 1542 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Cma17g00917 1542 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 Gene3D - 439 623 - -
Cma17g00917 1542 PANTHER MYOSIN 19 1534 - -
Cma17g00917 1542 ProSiteProfiles Dilute domain profile. 1165 1480 IPR002710 -
Cma17g00917 1542 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Cma17g00917 1542 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515
Cma17g00917 1542 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Cma17g00917 1542 Pfam IQ calmodulin-binding motif 737 754 IPR000048 GO:0005515
Cma17g00917 1542 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma17g00917 1542 CDD MyosinXI_CBD 1116 1503 IPR037975 GO:0007015
Cma17g00917 1542 Gene3D Kinesin motor domain 65 662 IPR036961 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00569 Cma17g00917 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01141 Cma-Chr12:8982701 Cma17g00917 Cma-Chr17:6904312 0 dispersed
Cma13g00731 Cma-Chr13:6486327 Cma17g00917 Cma-Chr17:6904312 9.81E-10 dispersed
Cma17g00917 Cma-Chr17:6904312 Cma17g01361 Cma-Chr17:9101620 0 dispersed
Cma17g00917 Cma-Chr17:6904312 Cma08g00569 Cma-Chr8:3238982 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00917 K10357 - csv:101207221 2734.9