Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00930 ATGGAGCTTGGCCTGAGCTTGGGCGATGCTCCCAAGCCCTTCCGCTTCGTTGAGAAGCAGCCACCAGTAACGCCGCGTCCGCGGCGGATTTCCCGGCCTGATTTAGGGTTCTGCGTCGACCTATCGATTGGCCGTCCGGTCGCCGGAGAGAAAGAAGACGACGAAGAGAAGATCAATCAGAGAGATTATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTTCCTCATAATCCCGTTCCGCGAAACCTAACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGATCGAACCGCATCGCCTAACAGTGCGGCGTCGTCGTTTCAGATGGAGTTTGGATTGTACGGCGGCGGAGGGAACATTTCTTGCCAGAGAGATCAGATGGAAAATGGCGTAATCGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGATGAAAATGGATCCACGAGGAAGAAACTCAGACTCTCAAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCCAAACAGAAACTTGCACTCGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGACTTCAAAAGGAGGTTCAAGAATTGAGAGCTTTGAAAACCACTGACTCATTTTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTGACCTCAACATCGGCCGGCTCCAGCGGAGGAAAATCAACGGAGGCAGTTTCGAAACGATCTGGTTTCGCCATTACTGGGCGACCAAGCTCCTCCTCTTTCCCATTTTCTGCTTAA 939 48.99 MELGLSLGDAPKPFRFVEKQPPVTPRPRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCQRDQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTTDSFYMQLPATTLTMCPSCERVTSTSAGSSGGKSTEAVSKRSGFAITGRPSSSSFPFSA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6988226 6989634 + CmaCh17G009300.1 Cma17g00930 312825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00930 312 CDD homeodomain 162 219 IPR001356 GO:0003677
Cma17g00930 312 PANTHER - 1 293 - -
Cma17g00930 312 Gene3D - 166 216 - -
Cma17g00930 312 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677
Cma17g00930 312 MobiDBLite consensus disorder prediction 46 68 - -
Cma17g00930 312 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Cma17g00930 312 SMART halz 218 261 IPR003106 GO:0006355|GO:0043565
Cma17g00930 312 MobiDBLite consensus disorder prediction 148 167 - -
Cma17g00930 312 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
Cma17g00930 312 SMART HOX_1 160 222 IPR001356 GO:0003677
Cma17g00930 312 Coils Coil 224 254 - -
Cma17g00930 312 MobiDBLite consensus disorder prediction 276 312 - -
Cma17g00930 312 SUPERFAMILY Homeodomain-like 153 219 IPR009057 -
Cma17g00930 312 MobiDBLite consensus disorder prediction 143 167 - -
Cma17g00930 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 293 - -
Cma17g00930 312 MobiDBLite consensus disorder prediction 1 113 - -
Cma17g00930 312 Pfam Homeodomain 162 216 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00846 Cma-Chr4:4348299 Cma17g00930 Cma-Chr17:6988226 1.60E-74 dispersed
Cma06g00108 Cma-Chr6:584033 Cma17g00930 Cma-Chr17:6988226 1.22E-93 dispersed
Cma07g00621 Cma-Chr7:2669609 Cma17g00930 Cma-Chr17:6988226 9.52E-74 dispersed
Cma16g01122 Cma-Chr16:8618431 Cma17g00930 Cma-Chr17:6988226 1.94E-69 dispersed
Cma01g00207 Cma-Chr1:941182 Cma17g00930 Cma-Chr17:6988226 1.85E-63 wgd
Cma14g00410 Cma-Chr14:1912100 Cma17g00930 Cma-Chr17:6988226 2.48E-106 wgd
Cma17g00930 Cma-Chr17:6988226 Cma08g00556 Cma-Chr8:3178646 1.18E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36685 PF00046 Homeodomain 2.10E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00930 K09338 - csv:101221600 512.686