Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00951 ATGACAGACCCTAATCACTCCAATTCCTTCATCTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCCCTTTCTCCCAATGCTGCCGCCGTCCTCCTCCTCCTCCGCCACCGCAAGCCCTCCCTCTCCTTAACACCTTCTCGCCGGAAACCACCGATCATCCCTCCTCCTCCACCAGCTACGAACACGACTCTCCGCCACTCGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCAATCTCGACTACTCTCGTTCCATCTCGCCGGACCCCACTGGGAAAACCCTTGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCGCGCCCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCATGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCTCTCAAGGACCACATTAAGGCCTTCGGTCGTGGGCATGGTGCACTCGGCCTTGACTACTTTGACGACGACAATGAACCCGGTTCTGAACTTGAACACGAACAACATGAACCTCAACTCCTCTTCCATCTCCATTAA 888 52.48 MTDPNHSNSFIFIPLPSSPPSNSPFSQCCRRPPPPPPPQALPLLNTFSPETTDHPSSSTSYEHDSPPLALDFSLSCPSSNLDYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLH 295
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 7075795 7078101 - CmaCh17G009510.1 Cma17g00951 312846
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00951 295 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Cma17g00951 295 MobiDBLite consensus disorder prediction 1 16 - -
Cma17g00951 295 Gene3D Classic Zinc Finger 190 263 - -
Cma17g00951 295 SMART c2h2final6 128 150 IPR013087 -
Cma17g00951 295 SMART c2h2final6 212 232 IPR013087 -
Cma17g00951 295 Gene3D Classic Zinc Finger 127 150 - -
Cma17g00951 295 Pfam Zinc finger, C2H2 type 128 147 IPR013087 -
Cma17g00951 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Cma17g00951 295 PANTHER ZINC FINGER PROTEIN WIP2 2 284 IPR043584 GO:0003700|GO:0010468
Cma17g00951 295 SUPERFAMILY beta-beta-alpha zinc fingers 195 232 IPR036236 -
Cma17g00951 295 SUPERFAMILY beta-beta-alpha zinc fingers 121 150 IPR036236 -
Cma17g00951 295 MobiDBLite consensus disorder prediction 17 43 - -
Cma17g00951 295 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 2 284 - -
Cma17g00951 295 MobiDBLite consensus disorder prediction 44 64 - -
Cma17g00951 295 MobiDBLite consensus disorder prediction 1 66 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma08g00533 Cma17g00951 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00440 Cma-Chr14:2082202 Cma17g00951 Cma-Chr17:7075795 1.57E-105 wgd
Cma17g00951 Cma-Chr17:7075795 Cma02g01240 Cma-Chr2:7287914 2.54E-115 wgd
Cma17g00951 Cma-Chr17:7075795 Cma20g00075 Cma-Chr20:330635 8.56E-114 wgd
Cma17g00951 Cma-Chr17:7075795 Cma08g00533 Cma-Chr8:3088730 3.67E-152 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36689 PF00096 zf-C2H2 0.0015 CL0361 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00951 - - csv:101209911 486.493