Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g00951 | ATGACAGACCCTAATCACTCCAATTCCTTCATCTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCCCTTTCTCCCAATGCTGCCGCCGTCCTCCTCCTCCTCCGCCACCGCAAGCCCTCCCTCTCCTTAACACCTTCTCGCCGGAAACCACCGATCATCCCTCCTCCTCCACCAGCTACGAACACGACTCTCCGCCACTCGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCAATCTCGACTACTCTCGTTCCATCTCGCCGGACCCCACTGGGAAAACCCTTGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCGCGCCCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCATGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCTCTCAAGGACCACATTAAGGCCTTCGGTCGTGGGCATGGTGCACTCGGCCTTGACTACTTTGACGACGACAATGAACCCGGTTCTGAACTTGAACACGAACAACATGAACCTCAACTCCTCTTCCATCTCCATTAA | 888 | 52.48 | MTDPNHSNSFIFIPLPSSPPSNSPFSQCCRRPPPPPPPQALPLLNTFSPETTDHPSSSTSYEHDSPPLALDFSLSCPSSNLDYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLH | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 7075795 | 7078101 | - | CmaCh17G009510.1 | Cma17g00951 | 312846 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g00951 | 295 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 130 | 150 | IPR013087 | - | |
| Cma17g00951 | 295 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Cma17g00951 | 295 | Gene3D | Classic Zinc Finger | 190 | 263 | - | - | |
| Cma17g00951 | 295 | SMART | c2h2final6 | 128 | 150 | IPR013087 | - | |
| Cma17g00951 | 295 | SMART | c2h2final6 | 212 | 232 | IPR013087 | - | |
| Cma17g00951 | 295 | Gene3D | Classic Zinc Finger | 127 | 150 | - | - | |
| Cma17g00951 | 295 | Pfam | Zinc finger, C2H2 type | 128 | 147 | IPR013087 | - | |
| Cma17g00951 | 295 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 128 | 155 | IPR013087 | - | |
| Cma17g00951 | 295 | PANTHER | ZINC FINGER PROTEIN WIP2 | 2 | 284 | IPR043584 | GO:0003700|GO:0010468 | |
| Cma17g00951 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 195 | 232 | IPR036236 | - | |
| Cma17g00951 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 150 | IPR036236 | - | |
| Cma17g00951 | 295 | MobiDBLite | consensus disorder prediction | 17 | 43 | - | - | |
| Cma17g00951 | 295 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 2 | 284 | - | - | |
| Cma17g00951 | 295 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - | |
| Cma17g00951 | 295 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma08g00533 | Cma17g00951 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g00440 | Cma-Chr14:2082202 | Cma17g00951 | Cma-Chr17:7075795 | 1.57E-105 | wgd | |
| Cma17g00951 | Cma-Chr17:7075795 | Cma02g01240 | Cma-Chr2:7287914 | 2.54E-115 | wgd | |
| Cma17g00951 | Cma-Chr17:7075795 | Cma20g00075 | Cma-Chr20:330635 | 8.56E-114 | wgd | |
| Cma17g00951 | Cma-Chr17:7075795 | Cma08g00533 | Cma-Chr8:3088730 | 3.67E-152 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36689 | PF00096 | zf-C2H2 | 0.0015 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g00951 | - | - | csv:101209911 | 486.493 |