Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00952 | ATGGAACCAGCAAAGATCGACTGGAAAAATGTTCAGTGGAGATTCGTAGAGGATGAATTGTACGAGCACATCAATGCTCCCAAATGGGTTGATTTCACCACGAACTCCGACGCTGTTGATGATGAGGCCTGGTTTTGTCGACCCGATTGTAAGCATCCAAAGACAGCTGAAGAGTTACTTCGAGTAACTCCTACGAAGCTTACAAGCCCGGGTTATAGCACTGAAACTCTTCAATCCAGTGATCGGATAGGAAGAGATGGAAACTTGAAGAGAAGAGGGCTTCCTCAATCTTCAAACAATGAGAATCAGAATCCGAATTCTTCAACGCCTCAAAGCCACACAGCCAAAGCCGCCACTAAAGCAGGGATCAAATCAAGCGCTGAGAAGAAGCCATTGATGGATGATGGGAAACAGAAGAACAATGGGGTACCATCGCTGAAAAGCACACTTTCAGCAAGGAACTTGTTTGCTGGGCGAGATATTCTGAACCAAATTACAGAGTTTTGTAATGAGATAAAAAGAATGGCGGTCAGGGTAAGGGAGAAAGAGAATGTTAAGCAATCGGCTGTGGAGAATGGTGTTGCTGGTGAGAAGAAATGTGTACAGAAGGAGGATCCATTGAAGGATTCGAATAATCTGGAAAGAAAGGTGAAGGAGAGGAAGCCATTTGGTGAACTGGTTGTAGAGAAATCTGATGGATCAATCAGTAACAGTGTGAAGCAGAAGAAAAGGATCAATATCAAAACGGTGGCGGACAGCGAAAATGTCCCGATCTCTCTGGACATGGAGAAAGTATGGCACAAAAGAGATGACGGTGAGCTGCAAATCCGAACCAATCCACCTTCTCCCCAATGCTTTTCCAACGTACGTGCACCATACAAAATCCCTGCTTCTTCAAAAGCTTCAAGATCAAGACTAAAGGAGAAGGAAACCATTGTAGGAGTGGAGGAGGTGACAAAAGGGGGAGTACCAGCTGAGAGGGTTAAGAACGTTTCTTCTGCTGTTGGTGAAAAAGAAGCAAGAGCATTGGATTGTCATTACAACCACACCACCACCCTGTCTTATAAGCTACACACTGATTATTGTGTCGTCACCTTGGCTTTTCGCTTCAGTCCTTCGTCAATCGGGAAATTAGGGTTTACTTTTCCTTTTCGTGAAATGGCTATGGCTGGGCGTATGAGATCGATCATCCCTGTATTCAATCAGATTCTGAAATCGGAGTCACAGACTCAGAGACCTGCTCTTCAAAGAGCCCTACTTTGCCCCACGACTGCCAACTCCGAGGTTATAATCAATGATTTCTCGTTTTTGTTTTCTGTTTTTAGCATCTCGATTCCTCGTTTTCCTCCTGCGCTTTCCTGCATATGTGCTTTGATTTCTCTAATGAAGGCATCGTTTGGAAAGACCATGGAGATATGGCATAACCTCCTCCTGGTCTCGAGGAACTATGCAACTGCTTCCAATAAAAGTGAGGTCAAAGTTAAGGTTCCTCTGGCTTTGTTTGGGGGGTCTGGAAACTATGCCTCTGCTTTGTACATTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGACAGAGCTTTTTGACCTTGTTGAGGCTTCACAGAGAAGTGCCACCTTTTCTCAGTTCACAAGAGATCCCTCTGTCCCTGCAGATACTAGGGTCAAGGCTATTACTGATATTTGCACAGCTGCTAAATTTTCAGAAGTTACAAAAAACTTTTTGGTTGTACTGGCTGAATATGGAAGGCTGAAATACATAGACAGCATTGCAAATAAGTTTCAGGAGTTGACAATGGCTCATAGAGGAGAGGTGAAGGCCATTGTGACTACAGTTATTCCCCTCCCTGCTGAAGAAGAGAAAGAACTGAAAGAGACCCTGCAGGATATTATCGGAGAGGGGAAAAAGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGTGGGCTAGTCGTAGAATTTAGCGAAAAACTGTTCGACATGTCCATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCGAACCTCGACAACCTCTGA | 2058 | 44.46 | MEPAKIDWKNVQWRFVEDELYEHINAPKWVDFTTNSDAVDDEAWFCRPDCKHPKTAEELLRVTPTKLTSPGYSTETLQSSDRIGRDGNLKRRGLPQSSNNENQNPNSSTPQSHTAKAATKAGIKSSAEKKPLMDDGKQKNNGVPSLKSTLSARNLFAGRDILNQITEFCNEIKRMAVRVREKENVKQSAVENGVAGEKKCVQKEDPLKDSNNLERKVKERKPFGELVVEKSDGSISNSVKQKKRINIKTVADSENVPISLDMEKVWHKRDDGELQIRTNPPSPQCFSNVRAPYKIPASSKASRSRLKEKETIVGVEEVTKGGVPAERVKNVSSAVGEKEARALDCHYNHTTTLSYKLHTDYCVVTLAFRFSPSSIGKLGFTFPFREMAMAGRMRSIIPVFNQILKSESQTQRPALQRALLCPTTANSEVIINDFSFLFSVFSISIPRFPPALSCICALISLMKASFGKTMEIWHNLLLVSRNYATASNKSEVKVKVPLALFGGSGNYASALYIAAVKANSLDKVETELFDLVEASQRSATFSQFTRDPSVPADTRVKAITDICTAAKFSEVTKNFLVVLAEYGRLKYIDSIANKFQELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDIIGEGKKVKLEQKIDPSILGGLVVEFSEKLFDMSIKTRARQMERFLREPANLDNL | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7086849 | 7094708 | + | CmaCh17G009520.1 | Cma17g00952 | 312847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00952 | 685 | MobiDBLite | consensus disorder prediction | 92 | 119 | - | - | |
Cma17g00952 | 685 | PANTHER | EXPRESSED PROTEIN | 1 | 345 | - | - | |
Cma17g00952 | 685 | Hamap | ATP synthase subunit delta [atpD]. | 499 | 678 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | MobiDBLite | consensus disorder prediction | 66 | 83 | - | - | |
Cma17g00952 | 685 | Gene3D | - | 504 | 596 | IPR026015 | - | |
Cma17g00952 | 685 | PANTHER | EXPRESSED PROTEIN | 1 | 345 | - | - | |
Cma17g00952 | 685 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 504 | 605 | IPR026015 | - | |
Cma17g00952 | 685 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 638 | 657 | IPR020781 | GO:0015986|GO:0016020|GO:0046933 | |
Cma17g00952 | 685 | MobiDBLite | consensus disorder prediction | 61 | 146 | - | - | |
Cma17g00952 | 685 | TIGRFAM | ATP_synt_delta: ATP synthase F1, delta subunit | 506 | 675 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | PRINTS | ATP synthase delta subunit signature | 503 | 522 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | PRINTS | ATP synthase delta subunit signature | 573 | 584 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | PRINTS | ATP synthase delta subunit signature | 651 | 669 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | PRINTS | ATP synthase delta subunit signature | 636 | 651 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | PRINTS | ATP synthase delta subunit signature | 584 | 598 | IPR000711 | GO:0015986|GO:0046933 | |
Cma17g00952 | 685 | Pfam | ATP synthase delta (OSCP) subunit | 505 | 674 | IPR000711 | GO:0015986|GO:0046933 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00223 | Cma17g00952 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00223 | Cma-Chr1:1027840 | Cma17g00952 | Cma-Chr17:7086849 | 7.22E-102 | wgd | |
Cma14g01006 | Cma-Chr14:5295228 | Cma17g00952 | Cma-Chr17:7086849 | 1.65E-89 | wgd | |
Cma17g00952 | Cma-Chr17:7086849 | Cma08g00529 | Cma-Chr8:3053089 | 4.83E-148 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00952 | K02137 | - | cmo:103499920 | 542.732 |