Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00952 ATGGAACCAGCAAAGATCGACTGGAAAAATGTTCAGTGGAGATTCGTAGAGGATGAATTGTACGAGCACATCAATGCTCCCAAATGGGTTGATTTCACCACGAACTCCGACGCTGTTGATGATGAGGCCTGGTTTTGTCGACCCGATTGTAAGCATCCAAAGACAGCTGAAGAGTTACTTCGAGTAACTCCTACGAAGCTTACAAGCCCGGGTTATAGCACTGAAACTCTTCAATCCAGTGATCGGATAGGAAGAGATGGAAACTTGAAGAGAAGAGGGCTTCCTCAATCTTCAAACAATGAGAATCAGAATCCGAATTCTTCAACGCCTCAAAGCCACACAGCCAAAGCCGCCACTAAAGCAGGGATCAAATCAAGCGCTGAGAAGAAGCCATTGATGGATGATGGGAAACAGAAGAACAATGGGGTACCATCGCTGAAAAGCACACTTTCAGCAAGGAACTTGTTTGCTGGGCGAGATATTCTGAACCAAATTACAGAGTTTTGTAATGAGATAAAAAGAATGGCGGTCAGGGTAAGGGAGAAAGAGAATGTTAAGCAATCGGCTGTGGAGAATGGTGTTGCTGGTGAGAAGAAATGTGTACAGAAGGAGGATCCATTGAAGGATTCGAATAATCTGGAAAGAAAGGTGAAGGAGAGGAAGCCATTTGGTGAACTGGTTGTAGAGAAATCTGATGGATCAATCAGTAACAGTGTGAAGCAGAAGAAAAGGATCAATATCAAAACGGTGGCGGACAGCGAAAATGTCCCGATCTCTCTGGACATGGAGAAAGTATGGCACAAAAGAGATGACGGTGAGCTGCAAATCCGAACCAATCCACCTTCTCCCCAATGCTTTTCCAACGTACGTGCACCATACAAAATCCCTGCTTCTTCAAAAGCTTCAAGATCAAGACTAAAGGAGAAGGAAACCATTGTAGGAGTGGAGGAGGTGACAAAAGGGGGAGTACCAGCTGAGAGGGTTAAGAACGTTTCTTCTGCTGTTGGTGAAAAAGAAGCAAGAGCATTGGATTGTCATTACAACCACACCACCACCCTGTCTTATAAGCTACACACTGATTATTGTGTCGTCACCTTGGCTTTTCGCTTCAGTCCTTCGTCAATCGGGAAATTAGGGTTTACTTTTCCTTTTCGTGAAATGGCTATGGCTGGGCGTATGAGATCGATCATCCCTGTATTCAATCAGATTCTGAAATCGGAGTCACAGACTCAGAGACCTGCTCTTCAAAGAGCCCTACTTTGCCCCACGACTGCCAACTCCGAGGTTATAATCAATGATTTCTCGTTTTTGTTTTCTGTTTTTAGCATCTCGATTCCTCGTTTTCCTCCTGCGCTTTCCTGCATATGTGCTTTGATTTCTCTAATGAAGGCATCGTTTGGAAAGACCATGGAGATATGGCATAACCTCCTCCTGGTCTCGAGGAACTATGCAACTGCTTCCAATAAAAGTGAGGTCAAAGTTAAGGTTCCTCTGGCTTTGTTTGGGGGGTCTGGAAACTATGCCTCTGCTTTGTACATTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGACAGAGCTTTTTGACCTTGTTGAGGCTTCACAGAGAAGTGCCACCTTTTCTCAGTTCACAAGAGATCCCTCTGTCCCTGCAGATACTAGGGTCAAGGCTATTACTGATATTTGCACAGCTGCTAAATTTTCAGAAGTTACAAAAAACTTTTTGGTTGTACTGGCTGAATATGGAAGGCTGAAATACATAGACAGCATTGCAAATAAGTTTCAGGAGTTGACAATGGCTCATAGAGGAGAGGTGAAGGCCATTGTGACTACAGTTATTCCCCTCCCTGCTGAAGAAGAGAAAGAACTGAAAGAGACCCTGCAGGATATTATCGGAGAGGGGAAAAAGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGTGGGCTAGTCGTAGAATTTAGCGAAAAACTGTTCGACATGTCCATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCGAACCTCGACAACCTCTGA 2058 44.46 MEPAKIDWKNVQWRFVEDELYEHINAPKWVDFTTNSDAVDDEAWFCRPDCKHPKTAEELLRVTPTKLTSPGYSTETLQSSDRIGRDGNLKRRGLPQSSNNENQNPNSSTPQSHTAKAATKAGIKSSAEKKPLMDDGKQKNNGVPSLKSTLSARNLFAGRDILNQITEFCNEIKRMAVRVREKENVKQSAVENGVAGEKKCVQKEDPLKDSNNLERKVKERKPFGELVVEKSDGSISNSVKQKKRINIKTVADSENVPISLDMEKVWHKRDDGELQIRTNPPSPQCFSNVRAPYKIPASSKASRSRLKEKETIVGVEEVTKGGVPAERVKNVSSAVGEKEARALDCHYNHTTTLSYKLHTDYCVVTLAFRFSPSSIGKLGFTFPFREMAMAGRMRSIIPVFNQILKSESQTQRPALQRALLCPTTANSEVIINDFSFLFSVFSISIPRFPPALSCICALISLMKASFGKTMEIWHNLLLVSRNYATASNKSEVKVKVPLALFGGSGNYASALYIAAVKANSLDKVETELFDLVEASQRSATFSQFTRDPSVPADTRVKAITDICTAAKFSEVTKNFLVVLAEYGRLKYIDSIANKFQELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDIIGEGKKVKLEQKIDPSILGGLVVEFSEKLFDMSIKTRARQMERFLREPANLDNL 685
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 7086849 7094708 + CmaCh17G009520.1 Cma17g00952 312847
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00952 685 MobiDBLite consensus disorder prediction 92 119 - -
Cma17g00952 685 PANTHER EXPRESSED PROTEIN 1 345 - -
Cma17g00952 685 Hamap ATP synthase subunit delta [atpD]. 499 678 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 MobiDBLite consensus disorder prediction 66 83 - -
Cma17g00952 685 Gene3D - 504 596 IPR026015 -
Cma17g00952 685 PANTHER EXPRESSED PROTEIN 1 345 - -
Cma17g00952 685 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 504 605 IPR026015 -
Cma17g00952 685 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 638 657 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cma17g00952 685 MobiDBLite consensus disorder prediction 61 146 - -
Cma17g00952 685 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 506 675 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 PRINTS ATP synthase delta subunit signature 503 522 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 PRINTS ATP synthase delta subunit signature 573 584 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 PRINTS ATP synthase delta subunit signature 651 669 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 PRINTS ATP synthase delta subunit signature 636 651 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 PRINTS ATP synthase delta subunit signature 584 598 IPR000711 GO:0015986|GO:0046933
Cma17g00952 685 Pfam ATP synthase delta (OSCP) subunit 505 674 IPR000711 GO:0015986|GO:0046933
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma01g00223 Cma17g00952 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00223 Cma-Chr1:1027840 Cma17g00952 Cma-Chr17:7086849 7.22E-102 wgd
Cma14g01006 Cma-Chr14:5295228 Cma17g00952 Cma-Chr17:7086849 1.65E-89 wgd
Cma17g00952 Cma-Chr17:7086849 Cma08g00529 Cma-Chr8:3053089 4.83E-148 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00952 K02137 - cmo:103499920 542.732