Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00962 ATGGCGATGACTAGGGTTCATGAGCCATCGCGATCCTTAGCAGGTAATACATGCACCATTCGGCTGACTGAAATTTTCGGGCGGGCGACCAAGTCTATTTTGGGCTTCTTTCTCATGATGGGTCTCTGCAATGGCGTGCATTACCTTTTGAGACCTTTTTCTCAACCTCGCACTACTTCTGATACGATCGTTGGTTTGGTTGTTGGAAACTTCATGAGGAAAGAACTCGATCTGTCAATACATAAGACGCTGCGTTATATTGTCGACTTTGGTATGACATGCTATATGTTTGTGCTGGGATTGGAGATGGATCCATGTGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCCGGAATGATTTCAACACTCATCTTAGCCTGTTCCACAATCCCATTTATTAGCTTTTCGAAGTCGAAAGAGATCAGTTTCATCCTCTCGCTCTCAACTGTTCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCAATCTTAAAATAGGCAGGTCGGATATAGGCCGACTCGTTATTGCTGCTGGAATGCATTCTGATTTTATATCCACTCTCGCGATCTGTATAGGTTATCTATTTTGCCAATGCCAAGAGACGCGTCTCTCCATTACCAATGGTTTTCAATTAGGTTTTGTGCTATTGATCCAGATGATAATGGCGGCGAAGGTTTCACCAGTATTCATGAACTGGGTGAATAACGAAAACCCCGAGGGTAAACCTATGAAGGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTATATTTGGTTACAACCCGACGCTCAGTGCATTCTTGGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACTGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAGCCTGGACAAATAATTACATGGGTCAGATTACTTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGAACTGTCATTGGTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCTGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCCATATCTGCAAAAATAGCTGGAAAGATATCTACATCTACGAGCCTTGCGATGGTATTTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCTCATATAATTAAAAGGGCGAGGAAACGCACACCTACACATCGAATGGCCCTCGAATTGCTTGACCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCATAACACTGGAGCAGCCATTAACATCATGGAAATTTCTCGGGGGACGGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACGTTAGTGCAGGGTGAAGGAGTGGACACTGTAACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTACTGCATTTCAGAGATATGTAGATGAAAATGGAGATGGAATTACCCTTAGAAGAATGTTGGCTCTCTCAGCATTCAATTGTATGGCACAAGACATTTGCATTTTAGCGGAGGACTTGTTGGGTGCTCTTATCATACTGCCATTCCACAAGCACCAGCGCGGAGATGGGTCGTTGAGCGAGGGCCAAGCAGGTTTCCGCTATGTGAACCGCAAGGTTATCAGACACGCCCCTTGTTCCGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTACGTAACCCTGAACGTGGCAGTGATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGCCTATGCTGGTCGAGTAGCTAGGCATCCTGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATCAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGACGAATGCTTTGCTTATTTTTACGAACGGCACGTGGCTGGTGGCCACGTCGCTTACGTTGAAAAACACATGGCCAGTTCCGCAGAGACGTATTCTACTTTGAAATCACTGGAAGGTCAATACACTCTCGTAATCGTAGGTCGAGGTGGGGGGGTGAACTCGGTGTTAACTTACGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGACGTTCTTTCCGGGTCTGAATTCTCCGCTAAGACCTCGGTTTTGATCGTCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGATTTTTCAATAATTCGAAGGATTTGCTTCTGTGCGCTAGGATTTGAGCCGGGTTTGCAGAATGGGAGAGTTAAGAATGAGTTTCTTGATGGGGTGCGTAAGGTGGAGGAGTTTCTCAACGATCCTTGGGGAATTAGGGTTAGTGATGGAAAGGGAGCGACGGTTCAGGTTTGGGTTCCGAAGGTTGCGCCGCCTCCCCCACCAGTGCAGCCTGTTGGGGTTGTTGGTGAGGCGTTTATTAGTGGAGCTGATGGGGTCGATGAGATGGCGGCGGCGATGTCGGCTCAGACGAAGCGTATTGCGCTTCAGCGTAAGGCTGCTGCTGCTATGATTGCAGCTGAGGACTATGCCAGGCGGTTTGAATCTGGGAGTTTAGTGGATGCCTCCGGTAGTCTCGTGGGGGAAGAGCAGAGGCAGTCGAATGTGAATGTAATGTGTAGAATATGTTTTGTTGGTGAAAATGAATCTAGTGAGAGAACACGGAGGATGCTTTCGTGCAAAACCTGTGGCAAAAAGTACCATCGCAGCTGCTTGAAATCCTGGGCTCAACATAGGGATCTATTTCACTGGAGTTCGTGGACTTGCCCTTCCTGCCGAGCATGCGAGGTATGCAGAAGAACTGGTGATCCAAATAAATTTATGTTCTGCAAAAGATGTGATGGTGCTTACCATTGTTACTGTCAGCATCCTCCTCACAAGAACGTTAGTTCTGGACCTTATTTGTGTCCAAAGCATACGAGGTGCCACAGCTGTGAGTCTAATGTTCCAGGAAATGGCCAAAGTGTGAGGTTTATAGAGATTCCGAATCTACTCCGATGGTTTGCTGTGACGTTTGCCAGCGCTGGGTGCACTGCCATTGTGATAGTATCAGTTGCTGTTGTAAACTTATGGATTGCACATCAGTTTTATACCATTGCTGCTTCCATTGGCTCCACTGTAATAGCCTACCTTACAGATGGTGTCATTTTTCAAATAGATGGGAATCTCCAGTACAAATGCACGGCGTGTCGTGGAGAATGTTATCAGGTAAAGAATCTAGACGATGCCGTTCAAGAGATTTGGAGAAGAAAGGATGAAGCGGATCGTGATCTAATTGTTAGCTTGAGGGCTGCTGCTGGATTACCCACTCAAGAAGAAATATTTTCCATTTCACCTTATTCAGACGACGAAGAAAACGGTCCTGCGGTTAGTAAGAACGAGTTTGGACGTTCATTCAAACTATCTCTGAAGGGGTTAGTTGACAAAACACCCAAAAAGAGCAAGGATTATGGGAAAAAATCATCGAATAAAAAATACGCGAAAGAAAAATCTTCTCGGACTCCTTTGGCTAATCAATCTGAAGTAGATCAGAGTTTGGAAGGGCGTAATGAGAAGACTGGTGGTTTGCAACCCGAAAATAATGAAGGACCTGACTCGTATTCTTCACCGGTTGCTGGGAGTGTTAGCCACAATGAAGGGATGTGCTCGATTAATCAACCAGGGGTGTTAAAACACAAGTTTGTGGAGGAGGTGATGGTAAGTGATGAAGAAAGGACCTCAAAAGTCGTTCAAATCAAGGCGAGGAAGGGTGACGGTGTCGATACTGGAGAAGATTCAGGAAAATATGCGAGTAAGTCGAAGACGGCTAAAGGAAAGAAGCTAGTAATAAACTTAGGCGCACGGAAAATTAACGTTGCTACTTCCCCGAAGTTTGATGCTTCAAGTTGCCAAGGAGAACAAGATTTGGTGTCCTCAAATGGAGACAAAGTCGATAACTCCAGCCAATCAACACGACCGAAAGCTGGGGAAACAGAGAAGAGCCTTCCTAGCTTCGGAAAAGTTAGATTTGGATGTTCGGACACGAATTCTGCGTTTGGCAGAGGTAACACTAGTAGCTCTGAACTTGGTCCTCCGAATGGCACTCGCGTATTTTCTCGTAAGAGAAACGTGGAAGGAAACACACCTGCAGTTCATTCTGACGTTTCCATGGTAAAAGAAGAGAAGGTACCTCCAGGGAAACAACTCGAGAGTGGATCCCATATATGCAACGATGGACACGACGATAATGGTCAGACAGCTTTACCACAGTCTTTGCCCAGGGACTCGAAACCTTTGTTGAAGTTCAAATTTAAGAAACGTCCCCTCGAAAATCAAATTTCTTGTCACGAGGAAGAAAAAAGTTCTGTCAAAGGGCAACGGTCGAAACGAAAAAGACCATCGCCCTTGATGGAGAAAATATCGTTCAATGAAGTCGACGACTTGGCTCGGTCTCATCAAGATAATTTATTGGATGAGATCATGGACGCTAATTGGATTCTCAAAAAATTGGGTAAAGATGCAATAGGAAAGAGGGTTGAAGTTCAACACCCAACAGACAAGTCATGGCAGAAAGGAGTGGTTTGTGACATGATCGATGGTACGTCAACGTTATCTGTCACCCTCGATGATGATAGAGTAAAAACATTGGAACTCGGGAAGCAAGGAATTCGCCTCGTTCCTCTTAAGCAAAAGAGCGTGTATGGAGACGATTCTTTCGAGGACTCGAAGGAGAGAGTGAACTCGAGCATTTCATGGAGGCCGATCCTCGGTAGGCAGTCTCTTCGAATCAGTTCTCCCTTGTAG 4956 45.36 MAMTRVHEPSRSLAGNTCTIRLTEIFGRATKSILGFFLMMGLCNGVHYLLRPFSQPRTTSDTIVGLVVGNFMRKELDLSIHKTLRYIVDFGMTCYMFVLGLEMDPCVLFKAPTRDAKVAYAGMISTLILACSTIPFISFSKSKEISFILSLSTVLSSTASPVLTRLITNLKIGRSDIGRLVIAAGMHSDFISTLAICIGYLFCQCQETRLSITNGFQLGFVLLIQMIMAAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTIFGYNPTLSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIITWVRLLLLFAIVTVGKVVGTVIGGAILGFHWPESVALGLLLTMKGHFHIYLAISAKIAGKISTSTSLAMVFVIFFTVVHAPKVVAHIIKRARKRTPTHRMALELLDPSSELKILLCIHGPHNTGAAINIMEISRGTANPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQMRDQVTTAFQRYVDENGDGITLRRMLALSAFNCMAQDICILAEDLLGALIILPFHKHQRGDGSLSEGQAGFRYVNRKVIRHAPCSVGILVDRGLGSVEKISRSYVTLNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHMASSAETYSTLKSLEGQYTLVIVGRGGGVNSVLTYGMNDWQQCPELGPIGDVLSGSEFSAKTSVLIVHQHNLKGELDGLDDDFSIIRRICFCALGFEPGLQNGRVKNEFLDGVRKVEEFLNDPWGIRVSDGKGATVQVWVPKVAPPPPPVQPVGVVGEAFISGADGVDEMAAAMSAQTKRIALQRKAAAAMIAAEDYARRFESGSLVDASGSLVGEEQRQSNVNVMCRICFVGENESSERTRRMLSCKTCGKKYHRSCLKSWAQHRDLFHWSSWTCPSCRACEVCRRTGDPNKFMFCKRCDGAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCESNVPGNGQSVRFIEIPNLLRWFAVTFASAGCTAIVIVSVAVVNLWIAHQFYTIAASIGSTVIAYLTDGVIFQIDGNLQYKCTACRGECYQVKNLDDAVQEIWRRKDEADRDLIVSLRAAAGLPTQEEIFSISPYSDDEENGPAVSKNEFGRSFKLSLKGLVDKTPKKSKDYGKKSSNKKYAKEKSSRTPLANQSEVDQSLEGRNEKTGGLQPENNEGPDSYSSPVAGSVSHNEGMCSINQPGVLKHKFVEEVMVSDEERTSKVVQIKARKGDGVDTGEDSGKYASKSKTAKGKKLVINLGARKINVATSPKFDASSCQGEQDLVSSNGDKVDNSSQSTRPKAGETEKSLPSFGKVRFGCSDTNSAFGRGNTSSSELGPPNGTRVFSRKRNVEGNTPAVHSDVSMVKEEKVPPGKQLESGSHICNDGHDDNGQTALPQSLPRDSKPLLKFKFKKRPLENQISCHEEEKSSVKGQRSKRKRPSPLMEKISFNEVDDLARSHQDNLLDEIMDANWILKKLGKDAIGKRVEVQHPTDKSWQKGVVCDMIDGTSTLSVTLDDDRVKTLELGKQGIRLVPLKQKSVYGDDSFEDSKERVNSSISWRPILGRQSLRISSPL 1651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7144723 7155359 - CmaCh17G009620.1 Cma17g00962 312857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1223 1274 - -
Cma17g00962 1651 Gene3D - 29 429 IPR038770 -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1346 1381 - -
Cma17g00962 1651 PANTHER CATION/H + ANTIPORTER 20 787 - -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1495 1520 - -
Cma17g00962 1651 SMART PHD_3 985 1031 IPR001965 -
Cma17g00962 1651 SMART PHD_3 930 984 IPR001965 -
Cma17g00962 1651 ProSiteProfiles Zinc finger RING-CH-type profile. 923 990 IPR011016 GO:0008270
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1201 1222 - -
Cma17g00962 1651 SUPERFAMILY FYVE/PHD zinc finger 975 1036 IPR011011 -
Cma17g00962 1651 SUPERFAMILY FYVE/PHD zinc finger 924 984 IPR011011 -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1462 1476 - -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1291 1328 - -
Cma17g00962 1651 CDD RING-H2 931 984 - -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1291 1323 - -
Cma17g00962 1651 ProSiteProfiles Zinc finger RING-type profile. 931 984 IPR001841 -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1345 1481 - -
Cma17g00962 1651 ProSiteProfiles Zinc finger PHD-type profile. 928 986 IPR019787 -
Cma17g00962 1651 Gene3D - 444 743 - -
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1400 1417 - -
Cma17g00962 1651 Pfam Sodium/hydrogen exchanger family 46 419 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma17g00962 1651 MobiDBLite consensus disorder prediction 1201 1275 - -
Cma17g00962 1651 PANTHER CATION/H(+) ANTIPORTER 28 20 787 - -
Cma17g00962 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 897 1040 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00962 Cma-Chr17:7144723 Cma02g00628 Cma-Chr2:3792971 2.44E-96 dispersed
Cma08g00520 Cma-Chr8:3004459 Cma17g00962 Cma-Chr17:7144723 0 transposed
Cma17g00962 Cma-Chr17:7144723 Cma08g00518 Cma-Chr8:2995216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00962 - - csv:101211645 1383.24