Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00970 ATGGCAGAAGCCAAGCATCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAGCCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTATCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCTTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAGAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCAAAAACTAAAAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTCCAGAATTTGCCTCCTTACAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAGGTTAAAGGATATGGAGAATGCTAATGCAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGTCCTTCATAACTCAAGATTCAGACGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGCGTTCCCATCTTAAATTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCGGGAACTGTGGAACCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCTTTAGAAGAAAATTGTAAATCATGTCAGACTGAACTAAGATTGATAGAGGACGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCGTTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTAGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCCATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCATCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCGCATCATCAGTCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTAGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAGCTGGAATATAGTGGGGCCTGCAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGAAAGCCGATGTTGA 3162 40.99 MAEAKHRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVSGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLEKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPYKHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENANAKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSCQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRVDQRKKKLESMEREDDLDTVVAKLADQATNFNVQRFHCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQHQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7195880 7213216 + CmaCh17G009700.1 Cma17g00970 312865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00970 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Cma17g00970 1053 CDD ABC_SMC5_euk 926 1028 - -
Cma17g00970 1053 Gene3D - 24 241 IPR027417 -
Cma17g00970 1053 CDD ABC_SMC5_euk 23 180 - -
Cma17g00970 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cma17g00970 1053 Coils Coil 401 435 - -
Cma17g00970 1053 Coils Coil 622 656 - -
Cma17g00970 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 294 IPR027417 -
Cma17g00970 1053 Coils Coil 842 879 - -
Cma17g00970 1053 Coils Coil 248 296 - -
Cma17g00970 1053 Coils Coil 329 359 - -
Cma17g00970 1053 Gene3D - 847 1012 IPR027417 -
Cma17g00970 1053 Coils Coil 664 698 - -
Cma17g00970 1053 Coils Coil 195 236 - -
Cma17g00970 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1004 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00970 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1936.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00970 Cma-Chr17:7195880 Cma17g01309 Cma-Chr17:8808710 3.33E-08 dispersed
Cma17g00970 Cma-Chr17:7195880 Cma04g00349 Cma-Chr4:1699886 3.76E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00970 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.3 0.0e+00 1401.7
Cma04g00349 . 1098 2137 Structural Maintenance of Chromosomes family AT5G07660 62.9 0.0e+00 1242.6
Cma04g00349 . 1081 2137 Structural Maintenance of Chromosomes family AT5G61460 65.1 0.0e+00 1309.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00970 Cma_Chr17 FPKM 3.251018 3.718284 4.187144 5.046741 13.168077 11.753435 14.253244 7.20939 6.152067 6.368055