Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00970 ATGGCAGAAGCCAAGCATCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAGCCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTATCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCTTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAGAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCAAAAACTAAAAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTCCAGAATTTGCCTCCTTACAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAGGTTAAAGGATATGGAGAATGCTAATGCAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGTCCTTCATAACTCAAGATTCAGACGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGCGTTCCCATCTTAAATTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCGGGAACTGTGGAACCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCTTTAGAAGAAAATTGTAAATCATGTCAGACTGAACTAAGATTGATAGAGGACGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCGTTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTAGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCCATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCATCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCGCATCATCAGTCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTAGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAGCTGGAATATAGTGGGGCCTGCAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGAAAGCCGATGTTGA 3162 40.99 MAEAKHRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVSGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLEKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPYKHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENANAKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSCQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRVDQRKKKLESMEREDDLDTVVAKLADQATNFNVQRFHCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQHQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7195880 7213216 + CmaCh17G009700.1 Cma17g00970 312865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00970 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Cma17g00970 1053 CDD ABC_SMC5_euk 926 1028 - -
Cma17g00970 1053 Gene3D - 24 241 IPR027417 -
Cma17g00970 1053 CDD ABC_SMC5_euk 23 180 - -
Cma17g00970 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cma17g00970 1053 Coils Coil 401 435 - -
Cma17g00970 1053 Coils Coil 622 656 - -
Cma17g00970 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 294 IPR027417 -
Cma17g00970 1053 Coils Coil 842 879 - -
Cma17g00970 1053 Coils Coil 248 296 - -
Cma17g00970 1053 Coils Coil 329 359 - -
Cma17g00970 1053 Gene3D - 847 1012 IPR027417 -
Cma17g00970 1053 Coils Coil 664 698 - -
Cma17g00970 1053 Coils Coil 195 236 - -
Cma17g00970 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1004 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00970 Cma-Chr17:7195880 Cma17g01309 Cma-Chr17:8808710 3.33E-08 dispersed
Cma17g00970 Cma-Chr17:7195880 Cma04g00349 Cma-Chr4:1699886 3.76E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00970 K22803 - csv:101210248 1936.0