Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00999 ATGGATGATAGCTGTGCGGTGTGTGCCGATGCCCTTGAATGGGTTGCCTATGGCTCTTGCGGCCATCGGGATGTCTGCTCCACCTGCGTTGCTCGCCTTCGATTCATTTGTGGTGATCGCTGCTGTTGCATCTGCAAGTCCGAATCCACCGTCGTCTTCGTCACTAAGGCCTTAGGAGATTATACAAGGACTATTAACGACTTCACAGTCTTTCCTTCTGAACCTAGAGAAGGTCGTTGTGGATCCTATTGGTATCATGAAGACACACAAGCATTTTTTGATGACGTTGACCACTACAAGATGATAAAAGCAATGTGCAGGTTATCATGCAGTGTGTGTGATAAGATAGGTGAAGATCAACCAAATGATGGCTCAAAGCGCCGAGGAAGATTTCGGAATATTGAACAGCTAAAGGGTCATTTGTTTCATCGACATAAGTTGTTTATGTGCAGCCTTTGTTTGGAAGGAAGGAAGATCTTTATTTGTGAACAAAAGCTGTATAATAGAGCACAACTGAATCAGCACATACACACTGGTGACTCTGAGGTGGACGGAAGTGAGAGTGAGAGAGGTGGTTTCACCGGACACCCAATGTGTGAGTATTGCAGGACTCCTTTTTACGGAGATAATGAGCTGTATACTCATATGTCAACAGAGCATTATACATGTCATATATGCCAAAGGCTCCATCCTGGACAGTATGAATATTATAAGAATTATGATGACCTGGAGATCCATTTCCGACAAGCACATTTTCTTTGTGAAGATGAAGCCTGCCTTTCTAAGAAGTTTATAGTGTTCCAATCTGAATCAGAAATGAAGAGGCACAATACTATTGAACATGGTGGTAAGCTATCTCGATCAAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTCGATATCGAAGAAGTAACGACCAAGATAATCGCCGTGGAAGACGAACATTTCGTCGTGATTCTTCTGACGATCTACTTTCTGTGGCCATTCAAGAAAGTTTTGAAACAGCCAATGTTGATGACACCACTCATGACCCACTACCTAGCGGACAAGTAGACTCAGATCAGGGAAATATAAGCAACATTGATCCCTTAATTGAACCATTTGAAGCCTTATCCACAACAGATTCTGAATCAGCTTCTAGATACCTTCAAGCATTGGGTCATTCTAGGAATTCCCAATTGGAGCAATCATCCTTTCCACCCCTATCAACAGCATCTAGCAGTAGCCATCCAAAACCCATTCCGGACAAAGATAATAACAGTATGGCTGCTCATCTTCGCCGCAAGAGGAATGTGACTGTAATAAATCCTGCCCAAGGTTGGCCAAAATCAAGTCGTGCGCCTGTGGTACCATCAAATAAATCATCTCAAGCTTGGCCTGCAATAAATGTCAATCATACGGCATCGAGCAGTTCTGGGCAGACTAAGGGTGCTGTGACCATCAGTAATGGCTCTTCAGGCTCTGGTTACTCAAATGCTGCTCAGATGCATGCGAAGGGTAAGACTAATTCTTCGAGTGGACCGGGTAGTAGTAGCAGTAGGATCAGCCATTCTGCTTCTGCTCCCAATCTCACCGACATGGCTTATACTGAACCCTCGGTTAATGATTTCCCTCCTGTATCTGCGGCACAGGCACGGAAGGTGCCCTCAAGTAGCCAGAGTTCGATGAACACCGAAGATGTCCAGACAGCTAACAAATCTCTAGTTGAAAAGATACGTGCTGCACTTGATTTTGACCAAGATAGATATGCCATTTTTAAAGATATATCTGCACAATATCGCCAAGGTCAGATCGACCCGGAAATGTACCTAGACTGTGTGCAGCAGTTCGGTTTATCACATCTTGTGCTTGAACTGGCTAGGCTCTGTCCTGATGCTCAGAAACAGAAAGAACTTGTGGGGATCTATAATGCTAGTTTACAGCAAGAAGTGATCCAAGAAAATGGTAGGGCTCAAGATAGCATTCAAATTAAAGTTAAGGGAAAGAAGGGTAAAGGGAAGTCTATAGATGTTAAAGACAGCAGTTCAAAGGACAGTTCAAAGGACAGATTAGCAGACAGTATCTTGAGCAGTGTTCGGGAGCTGCAGTCGAGTCTCAGGCCATTGGAGGAAGATGTTGAGGTATTATCGAAGGGTGAGTACCGTGCTTTGAAAGGCAAAACGAAGATATCATCCGATGACCAGCAAAGTGGGACAGGAGGACAAAACAGACAACCGTCTACTGGACTATCGAACCACCACAGCACAGGGGATGGAGATGGTGGGGGGACCAAGCAAAGAAAGAAAACCTCCAAGTTCCATAGAGTTCGTTTAGGCGATGGTTCGGTTGCTGCACTCTTAGATTTAAAAAACTCCAACCCTGCTTCAGACTCGGACCCATCTGAAAGAGTTGAGGATGGGAACAATACCGCTGGGGCAGTGCCTGTTCGGGGTGTGTGGCGAAACGGTGCTCAGAGGCTTTTCTCCTAG 2472 44.94 MDDSCAVCADALEWVAYGSCGHRDVCSTCVARLRFICGDRCCCICKSESTVVFVTKALGDYTRTINDFTVFPSEPREGRCGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDKIGEDQPNDGSKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKIFICEQKLYNRAQLNQHIHTGDSEVDGSESERGGFTGHPMCEYCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEIHFRQAHFLCEDEACLSKKFIVFQSESEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRRSNDQDNRRGRRTFRRDSSDDLLSVAIQESFETANVDDTTHDPLPSGQVDSDQGNISNIDPLIEPFEALSTTDSESASRYLQALGHSRNSQLEQSSFPPLSTASSSSHPKPIPDKDNNSMAAHLRRKRNVTVINPAQGWPKSSRAPVVPSNKSSQAWPAINVNHTASSSSGQTKGAVTISNGSSGSGYSNAAQMHAKGKTNSSSGPGSSSSRISHSASAPNLTDMAYTEPSVNDFPPVSAAQARKVPSSSQSSMNTEDVQTANKSLVEKIRAALDFDQDRYAIFKDISAQYRQGQIDPEMYLDCVQQFGLSHLVLELARLCPDAQKQKELVGIYNASLQQEVIQENGRAQDSIQIKVKGKKGKGKSIDVKDSSSKDSSKDRLADSILSSVRELQSSLRPLEEDVEVLSKGEYRALKGKTKISSDDQQSGTGGQNRQPSTGLSNHHSTGDGDGGGTKQRKKTSKFHRVRLGDGSVAALLDLKNSNPASDSDPSERVEDGNNTAGAVPVRGVWRNGAQRLFS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7314011 7319316 - CmaCh17G009990.1 Cma17g00999 312894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00999 823 MobiDBLite consensus disorder prediction 336 361 - -
Cma17g00999 823 PANTHER EBR1 1 821 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 724 753 - -
Cma17g00999 823 CDD RING-HC_ZNF598 5 46 IPR041888 -
Cma17g00999 823 MobiDBLite consensus disorder prediction 720 823 - -
Cma17g00999 823 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
Cma17g00999 823 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Cma17g00999 823 MobiDBLite consensus disorder prediction 666 685 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 546 563 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 433 563 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 447 531 - -
Cma17g00999 823 SMART c2h2final6 108 145 IPR013087 -
Cma17g00999 823 SMART c2h2final6 221 251 IPR013087 -
Cma17g00999 823 SMART c2h2final6 197 220 IPR013087 -
Cma17g00999 823 SMART c2h2final6 252 281 IPR013087 -
Cma17g00999 823 MobiDBLite consensus disorder prediction 389 421 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 389 416 - -
Cma17g00999 823 MobiDBLite consensus disorder prediction 336 362 - -
Cma17g00999 823 PANTHER ZINC FINGER PROTEIN 598 1 821 IPR044288 GO:0061630|GO:0072344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00999 K22381 - csv:101214376 1356.66