Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01003 ATGAATACTTTGAGTGGAGAAGCCAAGCTTGTGAGTTTATTAATGGTGGGCATCGTAATGGCATCTAAAGCTTATTGTCAAGACTTGGAATTAGGGTTCTATCGTCAGACATGTCCTTTGGCTGAACGCATTGTGAGAGCCACAGTGGCGAAGGCTGTTCACCACAACCCTGGCATGGCTGCTGGCCTTATTCGTTTGCATTTTCATGATTGTATTGTTCTAGGATGCGATGCATCGATACTCCTCGACAAAACGCCGCAAAATCCTGATTCCGAAAAAGACAATTTCGCCAACCCATTATTACGAGGCTTCGAAGTAATCGACGACGCCAAATCCCATCTTGAATCCCTATGTCCAAACACAGTTTCTTGCGCCGACATTTTAGCCTTTGCAGCTCGAGACAGCGTCGCCATCACCGGTCAATTCACCTACGCGGTCCCTGGCGGCCGTCGCGACTCATTGGTTTCCCATGGAGCAAACGTTTCCGACAACGTGCCATTTCCGACATCCGACATTGGGTTCCTCAAACAACGATTCGAACAACGAGGCCTGTCGTTGAGAGACATGGTGGCTCTCTCAGGCGCCCACTCCATCGGCATTGCTCCTTGCAGCGCCTTCTCCGAACGCCTTTACTTTTTTAACGATACAATTAATCAAACTGATCCGTCTTTGGACCCAAAGTTTGCGGCTTTTTTGAAAACCAAGTGTCCGTTGAATAGTAGGTTGAATCAAATAACGGCGGATTTGGATAATGTGTCGCCGAACCGGTTGGATGTTCAGTTTTTTGAGAATTTGAAGAGAAAGATGGGGGTTTTGTCGTCCGATCAGGCGTTGGTGACTGACCCTTTGACGGCGGCGACGGTGAGGAGATACCTGAGGAATAGAGCGGTGTGGATGAGGGATTTCTCGAAGGCGATGGTGAAGATGGGGAAGCTGCTGGTTTTGACTGGAACTCAAGGGGAGATTAGAAGGAACTGCCATTTTAAGAACTAG 993 48.34 MNTLSGEAKLVSLLMVGIVMASKAYCQDLELGFYRQTCPLAERIVRATVAKAVHHNPGMAAGLIRLHFHDCIVLGCDASILLDKTPQNPDSEKDNFANPLLRGFEVIDDAKSHLESLCPNTVSCADILAFAARDSVAITGQFTYAVPGGRRDSLVSHGANVSDNVPFPTSDIGFLKQRFEQRGLSLRDMVALSGAHSIGIAPCSAFSERLYFFNDTINQTDPSLDPKFAAFLKTKCPLNSRLNQITADLDNVSPNRLDVQFFENLKRKMGVLSSDQALVTDPLTAATVRRYLRNRAVWMRDFSKAMVKMGKLLVLTGTQGEIRRNCHFKN 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7333465 7335164 - CmaCh17G010030.1 Cma17g01003 312898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01003 330 Gene3D Peroxidase, domain 2 166 309 - -
Cma17g01003 330 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 Gene3D - 32 330 - -
Cma17g01003 330 PANTHER PEROXIDASE 25-RELATED 19 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 PANTHER PEROXIDASE 19 328 - -
Cma17g01003 330 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cma17g01003 330 Pfam Peroxidase 45 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cma17g01003 330 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma17g01003 330 CDD secretory_peroxidase 29 328 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00491 Cma-Chr8:2792619 Cma17g01003 Cma-Chr17:7333465 0 dispersed
Cma17g01003 Cma-Chr17:7333465 Cma19g00264 Cma-Chr19:1878536 2.03E-86 dispersed
Cma17g01002 Cma-Chr17:7327612 Cma17g01003 Cma-Chr17:7333465 4.17E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01003 K00430 - csv:101216219 489.96