Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01008 ATGGTTGCTGAAGCAGAGGTTATTGTTTGTCCGAAGAGCCTCCCGGTTCTAGAGGTGCCGTATTACAGTAAGGAAACTCGTCTTGAGGAAATTGAGTCCATTAATGGTGGTATTTTGATCGATCCGACTTTCAATCGTGTTCGTGCTTCCGAGCCCGTTTCTTCCAGTTCACAATCGGATATTAAACCCATGAAGAAAATTCCAGATCCCGACACCGACAAGGCAAAGGATAAGGAATTTCCGAATCTCCGGTCGGGTAGCTTTGCTGATATTGGACCGAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCACATTTAGGATCGCTGTTTAAGTTTCCTAAGCCAAGTGCCTTCTATGGGGTGTTTGACGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTTGAGGATGTCAATTTTCCTCAAATGCCAGATTTCGATGAAGTCTTGCCGGAGGAGATACAAAATTGCCTCCGGAAAGCATTTCTTCTGGCTGATCAAGCTCTAGCTGATGATTCTGGTGTCAGTAATTCGCATTTAATGGTGGCGAATGCTGGAGATTGCCGGGCTGTTCTCAGCCGGAATGGAGAGGCAGTAGATATGTCACAAGACCACCGGCCAATTTATTCGCTGGAGAAGCAACGGGTGGAAGAGCTGGGTGGCTATGTTGATGGTGGCTATCTGAACGGTGTTTTATCGGTGTCAAGGGCGTTGGGGGATTGGGACATGAAGCTCCCACATGGCTCTCCTTCACCTCTCATTGCAGAACCAGAATGCAAGCAGGTGGTTCTTACAGAGGAGGATGAGTTCTTGATCATAGCTTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCGGTCAATGTAGTTCGACAGGGGCTTCAACGACACGCCGACCCAGAGCGGTGTGCTCGAGAGCTCGTCCTGTGTGCTTTGCGATTGGACTCATTCGATAATCTGACTGTTGTGGTGGTTTGCTTCTCTAGTTTTCATGGCGACGGTTCCTCACTACCACAGCAGAGAAAATTGAGATACTGCAGTCTGTCTGCGCAGGCTCTTTGTAGTCTGCAGAGATGGTTGGATAACAGTGGATGCCAATGA 1143 47.51 MVAEAEVIVCPKSLPVLEVPYYSKETRLEEIESINGGILIDPTFNRVRASEPVSSSSQSDIKPMKKIPDPDTDKAKDKEFPNLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVNFPQMPDFDEVLPEEIQNCLRKAFLLADQALADDSGVSNSHLMVANAGDCRAVLSRNGEAVDMSQDHRPIYSLEKQRVEELGGYVDGGYLNGVLSVSRALGDWDMKLPHGSPSPLIAEPECKQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHADPERCARELVLCALRLDSFDNLTVVVVCFSSFHGDGSSLPQQRKLRYCSLSAQALCSLQRWLDNSGCQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7344665 7348713 - CmaCh17G010080.1 Cma17g01008 312903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01008 380 SMART PP2C_4 74 339 IPR001932 -
Cma17g01008 380 SUPERFAMILY PP2C-like 80 342 IPR036457 -
Cma17g01008 380 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 359 - -
Cma17g01008 380 PANTHER PROTEIN PHOSPHATASE 2C 1 359 IPR015655 GO:0004722|GO:0006470
Cma17g01008 380 Pfam Protein phosphatase 2C 94 333 IPR001932 -
Cma17g01008 380 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Cma17g01008 380 MobiDBLite consensus disorder prediction 49 86 - -
Cma17g01008 380 ProSiteProfiles PPM-type phosphatase domain profile. 84 341 IPR001932 -
Cma17g01008 380 CDD PP2Cc 84 341 IPR001932 -
Cma17g01008 380 Gene3D - 77 359 IPR036457 -
Cma17g01008 380 MobiDBLite consensus disorder prediction 64 83 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00490 Cma17g01008 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01298 Cma-Chr8:7867236 Cma17g01008 Cma-Chr17:7344665 3.34E-115 dispersed
Cma12g01161 Cma-Chr12:9161099 Cma17g01008 Cma-Chr17:7344665 5.51E-75 dispersed
Cma17g01008 Cma-Chr17:7344665 Cma09g00389 Cma-Chr9:1640856 8.57E-37 dispersed
Cma17g01008 Cma-Chr17:7344665 Cma08g00490 Cma-Chr8:2784677 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01008 K14803 - csv:101216626 648.277