Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01021 ATGGAGGAGGTGGCAGCAGCTGATTCATTGCGGTTTCCATTTCCCGAGCACAAGGGTTATCTCGGGTTCATGGAGATGCTCGATGTTGATCAAGAATTTTTATCCCAATTTGATGTGTTTTCGACGTCATCTTTGTCGTCTTCTCTGATTTCAAATCCTATCGAAAATTTGGAGATTTGGAATCAGTGGCCAACTACACCAAATTATTCATCGTCGATCTCGTCGACGTCGAGCGAGATCGTCAATGATGAGGTGATCGAGCCAAAGCTAGAGAGAGAAAAGAAACAACATTCCCGACAAACCCTAAAAACGGATAAGCAGTCGAAAACAAGGAAAACGAGTCGGAAGAAAAAAGATCAAGAACCAAGATTCGCGTTCATGACAAAAAGTGAAGTCGATCATTTGGAAGATGGTTATAGATGGAGAAAGTACGGTCAGAAAGCGGTGAAAAACAGCCCTTACCCTAGAAGCTACTATCGTTGTACTAATGTAGCATGCAATGTAAAGAAACGAGTGGAGAGATATTTAAAAGATTCAAGTATTGTCGTCACGACCTACGAAGGCCAACACACTCACTCTAGCCCCAACAACATGGCACGAACAACCTTCTTTCCTCCGCCCATCTCAACCGCCCTCTACAATGGCTCTGCAATGTTCACCACCGCCACCACAACCCCGTCTCTCTTCCACTACCAAAATGGTCATAATTCGAACTTTATCAACCACCCAAAGAGCTTCGTGGCATCATCATTTCATCCACCGTGTGACGTTGCATCCTCCAATCATGCTAATCAATTCTTTGCTGCCACGATCAACCATAGATTATTTCAAGATATCGCTCCTTTTCAATACAATGAATTGGCATGGAGAGATTGA 876 43.61 MEEVAAADSLRFPFPEHKGYLGFMEMLDVDQEFLSQFDVFSTSSLSSSLISNPIENLEIWNQWPTTPNYSSSISSTSSEIVNDEVIEPKLEREKKQHSRQTLKTDKQSKTRKTSRKKKDQEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTNVACNVKKRVERYLKDSSIVVTTYEGQHTHSSPNNMARTTFFPPPISTALYNGSAMFTTATTTPSLFHYQNGHNSNFINHPKSFVASSFHPPCDVASSNHANQFFAATINHRLFQDIAPFQYNELAWRD 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7412849 7415141 - CmaCh17G010210.1 Cma17g01021 312916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01021 291 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 34 253 - -
Cma17g01021 291 MobiDBLite consensus disorder prediction 88 125 - -
Cma17g01021 291 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g01021 291 SMART WRKY_cls 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g01021 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 34 253 IPR044810 GO:0003700
Cma17g01021 291 Gene3D WRKY domain 120 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma17g01021 291 SUPERFAMILY WRKY DNA-binding domain 127 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma17g01021 291 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00279 Cma17g01021 CCT
Cma14g00940 Cma17g01021 CCT
Cma14g00940 Cma17g01021 ECH
Cma01g00279 Cma17g01021 ECH
Cma08g00480 Cma17g01021 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01021 Cma-Chr17:7412849 Cma17g00379 Cma-Chr17:2109793 1.33E-44 dispersed
Cma01g00279 Cma-Chr1:1325486 Cma17g01021 Cma-Chr17:7412849 3.89E-42 wgd
Cma14g00940 Cma-Chr14:4878868 Cma17g01021 Cma-Chr17:7412849 1.19E-42 wgd
Cma17g01021 Cma-Chr17:7412849 Cma08g00480 Cma-Chr8:2725379 1.14E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36695 PF03106 WRKY 1.90E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01021 - - bhj:120085316 371.318