Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01031 ATGAAAGATACTGGACCTCTGGACTTCAGCGCCGAAAGAGTTCTCGCAAAGGAGTTCCTTGCGAACTTCGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATCCTGCAAGATGTTGCAAATCGCAGAGTCCGTGCAATTCAAATCGATCTCGAGGATCTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCCAACGTATTACAGAAAACACCCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTATAGATGATGATCACGACATACTAATGACACAAAGGTCTGATGACGGACCTGATACTGTCGATAACCCTGACCCACGCCAAAAAATGCCGCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCACCTTCAAAGGGCCGTCCGTTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTTGTGAGAATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCGTTGATGCAGGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACTTAATTCTTCAACTCAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAACATGTTCCGAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGAATTTTTCTGCCCATTCCTTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCAATCACCCATTTCAAGAAAAAATATGAAGAATACGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCGTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTCGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTAATGGGTGATCCTGGTGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGCATTGCCAAGGCTGGAATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTCCGTAGAACTCCTGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCCGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATCCGTCAGGAAGAAGCTAAATCCAACACTCCCCATTCATATACCACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCCGAGACTGTGGCCCAAAGTGATGTTGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAGTCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGCGATGAAGCTGCCAGAACTAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCTGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2166 43.72 MKDTGPLDFSAERVLAKEFLANFADANGEAKYLNILQDVANRRVRAIQIDLEDLFNYKDLDEDFLQRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNPDPRQKMPPEIKRYFEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7473100 7478817 - CmaCh17G010310.1 Cma17g01031 312926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01031 721 Pfam MCM N-terminal domain 17 135 IPR027925 -
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 370 385 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma17g01031 721 SMART mcm 142 641 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 Gene3D - 314 646 IPR027417 -
Cma17g01031 721 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Cma17g01031 721 Gene3D - 12 103 - -
Cma17g01031 721 SUPERFAMILY Nucleic acid-binding proteins 16 297 IPR012340 -
Cma17g01031 721 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 39 699 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 650 IPR027417 -
Cma17g01031 721 CDD MCM7 332 639 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 39 699 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma17g01031 721 Pfam MCM OB domain 146 276 IPR033762 -
Cma17g01031 721 Gene3D - 173 227 - -
Cma17g01031 721 Gene3D - 146 274 IPR012340 -
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 123 135 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 161 172 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 179 190 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 196 208 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma17g01031 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 288 298 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00117 Cma-Chr7:626424 Cma17g01031 Cma-Chr17:7473100 3.50E-110 dispersed
Cma11g01087 Cma-Chr11:5968219 Cma17g01031 Cma-Chr17:7473100 3.96E-95 dispersed
Cma17g01031 Cma-Chr17:7473100 Cma19g00684 Cma-Chr19:7093951 4.86E-110 dispersed
Cma17g01031 Cma-Chr17:7473100 Cma08g00472 Cma-Chr8:2658734 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01031 K02210 - csv:101219064 1393.25