Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g01040 | ATGGAAATTGACTCTTGCAAAGTGTTTTTAGGTGTTAAGTTCGTTCTATTTGGATTCAATAACTTCGATGAGAAACAGGTTCGGTCGAAGCTAATCGATGGCGGAGGGGTTGATGTTGGTCAGTATGGCCCGAGTTGTACTCATGTGATCGTGGATAAGAATAAGATTGTTTATGATGATCCTGTTTGTGTTGCTGCTCGAAATGATGGCAAGTTGCTTGTCACGGGCTTATGGGTTGATCATAGACATGATTCTGGGTTGCTCGCAGATGCTAGTTCGGTATTGTACAGACCCTTGAGAGAGCTGAATGGTATCCCGGGGGCTAAAAGTTTGATCATGTGCTTGACTGGGTATCAACGACAGGATAGAGATGATGTTATGACAATGGTTGGCTTGATAGGTGCTCAATTCTCTAAGCCACTGGTGGCAAATAAAGTTACCCACCTCATATGTTACAAATTTGAAGGGGACAAATATGAGCTTGCTAAAAAACTGAGGACCATAAAGCTTGTCAATCATCGTTGGCTGGAAGACAGCTTGAAGGACTGGATGCTACTTCCAGAATCAAATTACAACATGAGTGGATATGACATGGAAATGTTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAACAGTGACATCACCAAACATTCCGCGAAGAGAAACACGAAGAGTCCTGACAACATGAAATTTGGTTTGCATTCAACCAGTGGAATACCTAAGACACTGCCAGCTTCAAGGACATTAGATGACCGCACAAACATTGCTGATACTAAGATCATGTTGACAGTTCCTACTACCGACACTAAATTTAGTCCTTCTGGAAAGTTTGACAAGCATGGTGCTGTCGGGAGACCTACTTGTCAGGAAGATGATGTTTTTAGTGCTCCTTGGACTTTTATGCCATCTGACATGCATATCCAAACTTCTGAATCTGAGAAGCCGAAAGTGAAAAATGAGGTGGTGACAACTCCATCAATTGCAGCGAGGTCCCCGCGGCTGTGTGCTACCAGTTACTCTAGGAAAAGCTCATCGAAGTCACCACTTCCACTGTTTTCAGGAGAAAGAATGGACAGAGCTGATATCTCATGCAAAATGGCAGTAGTTGAAATGAAAGATAATATTAGTGTTGATGTATCGTCAGCAAAAATGGAGAAAGTGAAGTATGCAACTTTCGCAGGCCATGAGCAAAATTCTTCGTGGGGAATTGATTTATTTGGCACAGGAGATTCAACTGCTACATTGCCTCTGAAAAGGATTTCAGATGTATCTTGCGACGTTTCTCCATCTCATAAAATGAGCGAGAACTCAAAATCATGTACCCTGAATAGCCCATCCGTAGACGAAAAATTTTTAGGGTTGGAAATGAGAAGTGTTTCTTTAAACAACAATGATTATAGTGAGCGTCGTGCTAAGAACTTGCAGCATAGTAGGGCTATTACTGACACCCCTAGTTCTATCAAAAAACCATTGACATGCGACTTACCTATCAGCAATGGTGTAAGCTCTCCAACTGAAGATGTCTCTGAGGACAGCAAGAAGACTCCTCGAACCCCCTTCCAGATATCAGGAAAAGTCTTGTCACCTGATAAGCCTGACAAGCTAAATCATGATTACGTGATTTTGGGAGATGTGGTTGGAAAAACTAAAGAAACAGATAGGCAGCAGAATGGTGTTTCGGCTACATCTGAAAGTGATAGAGGTACCAATGCTACGAACTCAGCTTCGCCCACTAATTTGAATTTTTCTGTTCAAAGTAGCGACTTTCCTTCCAAACAACAAAGAATAAAGATGTTCGCCAAAAAGAGCTTGGGTTCTAGACCAAAGTTGGGCAGTGCCGGTCGCAAGGGTTCTATTCTCACGAATAAAACCACTTCCTTGAATTATTCAGTTTCTTCATCTTTTGGGAATGATGAAAAACTCTTCAGCTCATCTCCTCAAGATGTCAGTATTGGAGTGAAACAGGTTGTGGAGACGACAGATATGGGGGATATTTCTCACAACTATGAAGCCATGGATGAGGATGACAAAACTACAAATCCAGAAAATAAAGAAGCAGATTTTGAGAAGTCAACGATGGATAAGGAGAATTTTGAGGAAGTTCAGTTAATGAGCAATGAGGATAAGCTAGCAAAAGAGACTGCATCTGGAGTAAAATGTAACAATAGTACTAGTTTACTTGATGATACGATTCCTTCGGGTACAGCAGAAGTGATTGAACCCAGAGAACCCATTTCCATTGGGGATGTACAGCTGGATGAATTAAGAGTAGAAGATGAAAAATCAAAATTGAACGTAGGAGGGAGAAGTCCAACGGAAGAAACAACGTTGATAAACTCATCGAAAATGAAGTCTAAACAAGGTAAGGTTGGTAAAGCACCCCGTAAGAAAACTGAGAAGACTGGGAAGAAACCCCAGTTGCTTGCTGCAGGTCCTCATACTGAAGTCCATACTATACCCGATTATAAGTCAGAGAAGGAAAATGAGCCATGTAATGTTGGTGACAAAACTACCGATCTTGTCGAGCATTGTTTAGCTAAACCTGCGGTCAAGTCTAATACAAATCAAAGAAAGGCCAATAAAAAATATTCAGAGATCAGTGTCAATTCTTCCATGGAAGTTGAAGAAGTTCTGAGAGAAGTAAAACCTGAACCTGTATGTTTTATCTTGAGTGGACATCGTCTACAAAGGAAGGAGTTTCAGAAGGTAATCAAGCATTTGAAAGGTAGAGTTTGCAGAGATTCTCATCAGTGGTCATATCAGGCTACACATTTCATAGCCCCCGATCCAGTCCGTAGAACTGAAAAGTTTTTTTCGGCTGCAGCATCTGGAAGGTGGATTCTCAAATCTGATTATCTTACAGATAGTAGTCAGGTTGGAAAACTCTTGAAGGAGGAGCCTTATGAATGGTACCAAAATAGCCTCACTGAAGACGGAGCAATCAATTTGGAAGCACCTAGGAAGTGGCGGCTCTTGAGGGAGAAAACGGGTCATGGTGCTTTCTATGGAATGCGTATTATCATATATGGGGAATGTATTGCTCCACCTCTGGATACTCTCAAGCGTGCTGTTAAGGCTGGAGATGGAACAATACTAGCCACATCTCCACCTTACACTAGATTCCTTAACTCTGGAGTTGATTTTGCTGTTGTCAGCCCTGGCATGCCACGTGCTGATATGTGGGTCCAAGAGTTCTTAAATAATGAGATACCCTGTGTAGCAGCTGATTACTTGGTTGAATATGTCTGCAAACCTGGCTATCCTCTTGATAAACATGTTTTGTACAATACTCATGCATGGGCGGAAAAATCTTTTGGTAACCTTCAGAGTAGAGCAGAAGTTTCCAAAGACGAGAGCCCACAGGACGATTGTAGCGATAACGATATAGCTTGCCAAGAGTGCGGGTCTCAAGATAGAGGTGAAGTGATGCTCATTTGTGGCAATGAAGATGGTTCAATTGGTTGTGGAATTGGTATGCATACAGATTGCTGCAATCCTCCATTACTGGTTATTCCAGAGGGTGATTGGTTTTGTTCAGACTGTATTAGTAGTAGAAACAGCAACTCTCCAAATAAAAGGAAGAAGGGAGTGTCAGTGAAGAGGAAGTAA | 3615 | 41.77 | MEIDSCKVFLGVKFVLFGFNNFDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCVAARNDGKLLVTGLWVDHRHDSGLLADASSVLYRPLRELNGIPGAKSLIMCLTGYQRQDRDDVMTMVGLIGAQFSKPLVANKVTHLICYKFEGDKYELAKKLRTIKLVNHRWLEDSLKDWMLLPESNYNMSGYDMEMFEAEAKDSEEESNSDITKHSAKRNTKSPDNMKFGLHSTSGIPKTLPASRTLDDRTNIADTKIMLTVPTTDTKFSPSGKFDKHGAVGRPTCQEDDVFSAPWTFMPSDMHIQTSESEKPKVKNEVVTTPSIAARSPRLCATSYSRKSSSKSPLPLFSGERMDRADISCKMAVVEMKDNISVDVSSAKMEKVKYATFAGHEQNSSWGIDLFGTGDSTATLPLKRISDVSCDVSPSHKMSENSKSCTLNSPSVDEKFLGLEMRSVSLNNNDYSERRAKNLQHSRAITDTPSSIKKPLTCDLPISNGVSSPTEDVSEDSKKTPRTPFQISGKVLSPDKPDKLNHDYVILGDVVGKTKETDRQQNGVSATSESDRGTNATNSASPTNLNFSVQSSDFPSKQQRIKMFAKKSLGSRPKLGSAGRKGSILTNKTTSLNYSVSSSFGNDEKLFSSSPQDVSIGVKQVVETTDMGDISHNYEAMDEDDKTTNPENKEADFEKSTMDKENFEEVQLMSNEDKLAKETASGVKCNNSTSLLDDTIPSGTAEVIEPREPISIGDVQLDELRVEDEKSKLNVGGRSPTEETTLINSSKMKSKQGKVGKAPRKKTEKTGKKPQLLAAGPHTEVHTIPDYKSEKENEPCNVGDKTTDLVEHCLAKPAVKSNTNQRKANKKYSEISVNSSMEVEEVLREVKPEPVCFILSGHRLQRKEFQKVIKHLKGRVCRDSHQWSYQATHFIAPDPVRRTEKFFSAAASGRWILKSDYLTDSSQVGKLLKEEPYEWYQNSLTEDGAINLEAPRKWRLLREKTGHGAFYGMRIIIYGECIAPPLDTLKRAVKAGDGTILATSPPYTRFLNSGVDFAVVSPGMPRADMWVQEFLNNEIPCVAADYLVEYVCKPGYPLDKHVLYNTHAWAEKSFGNLQSRAEVSKDESPQDDCSDNDIACQECGSQDRGEVMLICGNEDGSIGCGIGMHTDCCNPPLLVIPEGDWFCSDCISSRNSNSPNKRKKGVSVKRK | 1204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 7515392 | 7521911 | - | CmaCh17G010400.1 | Cma17g01040 | 312935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g01040 | 1204 | SUPERFAMILY | FYVE/PHD zinc finger | 1120 | 1188 | IPR011011 | - | |
| Cma17g01040 | 1204 | Gene3D | BRCT domain | 99 | 230 | IPR036420 | - | |
| Cma17g01040 | 1204 | SMART | PHD_3 | 1132 | 1184 | IPR001965 | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 770 | 788 | - | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 485 | 533 | - | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 204 | 248 | - | - | |
| Cma17g01040 | 1204 | SUPERFAMILY | BRCT domain | 109 | 194 | IPR036420 | - | |
| Cma17g01040 | 1204 | CDD | BRCT_TopBP1_rpt7 | 889 | 962 | - | - | |
| Cma17g01040 | 1204 | SUPERFAMILY | BRCT domain | 888 | 974 | IPR036420 | - | |
| Cma17g01040 | 1204 | Gene3D | BRCT domain | 2 | 93 | IPR036420 | - | |
| Cma17g01040 | 1204 | SMART | BRCT_7 | 106 | 183 | IPR001357 | - | |
| Cma17g01040 | 1204 | SMART | BRCT_7 | 881 | 962 | IPR001357 | - | |
| Cma17g01040 | 1204 | SMART | BRCT_7 | 1000 | 1087 | IPR001357 | - | |
| Cma17g01040 | 1204 | SMART | BRCT_7 | 6 | 86 | IPR001357 | - | |
| Cma17g01040 | 1204 | Gene3D | BRCT domain | 881 | 998 | IPR036420 | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 554 | 594 | - | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 548 | 594 | - | - | |
| Cma17g01040 | 1204 | ProSiteProfiles | BRCT domain profile. | 109 | 193 | IPR001357 | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 210 | 226 | - | - | |
| Cma17g01040 | 1204 | Pfam | twin BRCT domain | 111 | 175 | IPR001357 | - | |
| Cma17g01040 | 1204 | ProSiteProfiles | Zinc finger PHD-type profile. | 1130 | 1186 | IPR019787 | - | |
| Cma17g01040 | 1204 | Pfam | BRCA1 C Terminus (BRCT) domain | 892 | 958 | IPR001357 | - | |
| Cma17g01040 | 1204 | MobiDBLite | consensus disorder prediction | 763 | 809 | - | - | |
| Cma17g01040 | 1204 | ProSiteProfiles | BRCT domain profile. | 890 | 972 | IPR001357 | - | |
| Cma17g01040 | 1204 | PANTHER | BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED | 6 | 1183 | IPR044254 | - | |
| Cma17g01040 | 1204 | Gene3D | BRCT domain | 999 | 1097 | IPR036420 | - | |
| Cma17g01040 | 1204 | SUPERFAMILY | BRCT domain | 7 | 85 | IPR036420 | - | |
| Cma17g01040 | 1204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1098 | 1199 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma08g00461 | Cma17g01040 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma17g01040 | Cma-Chr17:7515392 | Cma15g01224 | Cma-Chr15:7738040 | 7.68E-09 | dispersed | |
| Cma08g00461 | Cma-Chr8:2590744 | Cma17g01040 | Cma-Chr17:7515392 | 7.84E-07 | transposed | |
| Cma09g00770 | Cma-Chr9:3715225 | Cma17g01040 | Cma-Chr17:7515392 | 2.28E-08 | transposed | |
| Cma14g00805 | Cma-Chr14:4072139 | Cma17g01040 | Cma-Chr17:7515392 | 5.65E-15 | transposed | |
| Cma17g01040 | Cma-Chr17:7515392 | Cma08g00460 | Cma-Chr8:2590008 | 3.48E-20 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g01040 | K10728 | - | csv:101219784 | 1222.99 |