Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01060 ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATATTCCTCGGCAGCTGGTTCGAGCGGACCGGTTATTGAGATGGTGAGTTCGTCGCTTCTTCGTTCAAAGCGCTCTTCTGCTTACGCTCCTCTTAGCACAGAAGATCCAGGACCTTCGAGCAGTGATGCATTGATGGTGAGTCTGCCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACACCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGAATACGATTGAGGCGCTTACGCAAGAAATTACCAATCTTTTGAAAGCCTCTGAGAAGAGGTTGAAGAGAATTTCTTGTACTGGGTCTTCAGAGGATATTAGCATCAGAAAAAATGTACAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCACTGGATCTTCGTAGAAGACAGTCAATGTATCTGAAACATCTGCAGCAGCAAAAGGAGGGGCATGATGGAATTGATTTGGAGATAAATTTGAATGGAAGCAGAACTCTACAGGATGATGACCGATATGATGAATTTGGAACCAATGAACACCAAACGATGACATTTGGAATGGATGCGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCAGTGAATGAACTCGCCCAAATCATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTATAAGCAGCTTCAAAAGGCAGAGAAGAGTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACGGTGCTTGTTATTATGTGTTTCATAATGCTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA 969 43.34 MATRNRTAQFRRHRDAVKSVRAPLYSSAAGSSGPVIEMVSSSLLRSKRSSAYAPLSTEDPGPSSSDALMVSLPPAWVDDSEEITVNIHQIRRKMAELVKAHSKALMPSFADGKEDQNTIEALTQEITNLLKASEKRLKRISCTGSSEDISIRKNVQRSLATELQNLSLDLRRRQSMYLKHLQQQKEGHDGIDLEINLNGSRTLQDDDRYDEFGTNEHQTMTFGMDAQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKSQKNGGMVKCATVLVIMCFIMLVLLILKEIIM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7591210 7594770 - CmaCh17G010600.1 Cma17g01060 312955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01060 322 SMART SynN_4 67 182 IPR006011 GO:0016020
Cma17g01060 322 Pfam SNARE domain 262 314 IPR000727 -
Cma17g01060 322 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020|GO:0016192
Cma17g01060 322 Gene3D - 73 280 - -
Cma17g01060 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Cma17g01060 322 CDD SNARE_syntaxin16 229 287 - -
Cma17g01060 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma17g01060 322 PANTHER SYNTAXIN 1 317 IPR045242 -
Cma17g01060 322 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 317 - -
Cma17g01060 322 SMART tSNARE_6 221 288 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00643 Cma-Chr5:3249770 Cma17g01060 Cma-Chr17:7591210 9.91E-07 dispersed
Cma05g01087 Cma-Chr5:8576170 Cma17g01060 Cma-Chr17:7591210 1.86E-137 dispersed
Cma17g01060 Cma-Chr17:7591210 Cma07g00822 Cma-Chr7:3806629 2.07E-07 dispersed
Cma17g01060 Cma-Chr17:7591210 Cma12g01045 Cma-Chr12:8277641 1.48E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01060 K08489 - csv:101204192 555.829