Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01062 ATGGCTACCAATTCTCATGCCCCTACTCCGAGAGGTCTTCTCTGTAATGCGGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACCAGATTTCAGGTTCATGGACTGCCAAACATCGGGAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGACTACGTGGAATGTATAGAGGACTCGCACCGACCGTGCTTGCGTTGCTTCCTAACTGGGCTGTCTATTTCACAATCTATGGGCAGCTCAAAAGCTTTCTTCGTTCGGATGTTGAAAATCATCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGAGCTGGAGCTGCTACAACTATTGCAACGAATCCTCTATGGGTTGTTAAGACCAGGCTTCAGACGCAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGGTTTGCTCTTTCTTATCATGTTGCTATTCTGGTCTATGTATTATGGAGAAGTTCGTGGATTATAAGGATTCTTTGCCCGACTCTAACACTCGGTACCATGTTCTACAGTGGTCTTGTTCCTGCTTTGGCCGGTGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGCGTAACCGATTGCGTAAAGAAAGTATTTCAGCAAGATGGACTCCCCGGCTTCTATCGTGGATATTCCACAACCCCCATCACCATCTTCTTCTTCTTCATCTTCCAGTCATTTTCTGTTATTTACCGGCGAAAATGTCCGGTGCCGGGGAAAATTCCGGTGGTGAGTGCTGTTACTATTCTGTACTTGGACTGTGTAAGCAAGCTTCTGGCGATGAAATCCGAGGAGCTTACCAAATGGCATCCCGATAGGTGGATGAAAGACCCAAAAATGGCCGCTGAATCTAAACGGCGGTTTCAGCAAATCCAAGAGGCTTATTCAGTTCTATCAAACAAGGGGAAAAGAAGCATATACGACGCCGGATTGATTTCATTTCTTACAGACGATGATGACGAAGGATTCTGCGATTTCATGAACGAAATGGTCCCGATGATGAAGAACGCCACACAGCAGGTGGAGAAGGAAAAATCACTTTTACTGTCGAAAAGCTTGGAGACATTAGAGAAATATAAAATTCCAGATGATGCATTTCTTCTTTTGCGATCTTCTGTTAGTATTGGTCAGGATGAAACAAGATTGGAAAAACGTAGCAGAGATATACAATTTTCTAAAGTAGGAATAGAGTTTCCAAGGAATGAACAGCAGCTGGAGAAAACTTGCTCTGACACATCTCAACATGAAAGTCATCTTGGATCTCTTGAAATTTCTCCGAGGCATCAACTTTCTGCCGAGGCTGATGAGGATTGCCCTTGCATAGAAAAAAGAGAAGTGTCATGTGGTTTGGATTCCTTTCAAGATCTGGATGGTGGTAACGTAGTCTCTAATCAAGGAAAATCCCTTTCTGCCTTGCCAGATGAAGTTGAAAATATTTGTGCGGTTGTACTTGAAAGTGGAAGAGATTTATCTTGCACTACCTGCACGGATGGTGACTTTAAAGGACCTGAGATAATGGAGCTGATTATGGATCTAAATGATTTGAAGGATGAGAGGGACAAAATTCCAAAGGTAGAAATTTGTACAACATCTGACCCGCTTCCAGAATTGAGGCTTTTGTCTAGGCCAATTGTGGTGCCTGTATCGAGGCCATGTGAGGTTGAAGACAAACGAAAAGATCTCCCAATAGTCATGATGGAGCAAGAGATTATGGAAGCTATAAATGAGAACCCCATAGTTATTATATGTGGAGAGACTGGTTGTGGCAAAACAACTCAAGTTCCTCAGTTTCTGTATGAAGCTGGCTTTGGTTCATTTCAATCTAGTCACCAGAGAGGTACCATTGGGGTGACTCAACCTCGGCGTGTTGCTGTGCTTGCCACTGCTAAGCGTGTTGCATATGAGCTTGGTGTTCATCTAGGCAAAGAGGTTGGCTTTCAAGTAAGATATGACAAGAAAATTGGAGGTAGTAGCTCAATCAAGTTCATGACTGATGGAATTTTACTTCGCGAAGTTCAGCATGATTTTTTATTGAAGCGTTACTCTGTTCTAATTCTCGACGAGGCGCACGAGAGGAGTATGAACACTGATATATTAATTGGAATGCTGTCACGTGTTGTTAAGCTTCGTCAGGATTTGCATGTGAAACAACGACAGATAATGCTTTCAGGAGGAGAAATTAGTCCTGAAGATATGATTTTTCCATTGAAATTGGTGCTTATGAGTGCTACCTTGCGAGTGGAAGATTTCATCTCTGGGGGAAGGTTGTTTCATGTTTCACCTCCCATTATAGAAGTTCCCACTAGACAATATCCAGTAACGGTACATTTCTCGAGGAGAACAGATACAGTTGATTATATTGGTCAAGCATATAAAAAAGTTCTGGCAATTCACAAAAAGCTTCCACCTGGAGGTATACTCGTCTTTGTTACTGGACAGAGAGAAGTTGAGAATATGTGCAAGAAGCTTCGGGAAGCCTCAAAGAAGTGGATTAAAAAAACATCTGAAAGAAATGTTGGAATTGACAATGGTGCTATTGAAATGAATTCAATTCAGAATTTAGATATGAAGGAGATTAATGAAGCATTTGAAGATCATGAATTTTCAGCTGGTGAGCAAACAGATCGATTTAGTTCTTGTGATAAGGACGAGTTGGATGTAAATGATGATGCGTCTGATGCTTCATACAATTCAGAAACAGATAGCGAGTTGGAATTTAGTGAAGATGATGCATTGTTTGATGAGGATGATGGCAACCTTACTGATGTTTTAAGAGAAGATGCAAGTATGGCTTCTCTCAAGGCAGCATTTGATGCCTTGGATGGAAAAGTTGCCTTTGATAAAATACAGGTTGATCACTCTACAAAAGGTGAATTACCAGCCAAACGTGTTAGTGCAAGAATGAAAGAAAATGGTGAACTTGGTTTCTTGGTTGGTGCATTGCATGTTCTTCCTCTCTATGCCATGCTTCCGGCAGCGGCTCAACTGCGTGTGTTTGAAGAAGTCAAGGAAAGAGACCGGCTTGTTGTTATTGCTACTAATGTTGCTGAAACTTCGTTGACTATCCCAGGCATAAAATATGTGGTGGACACGGGTAGAGAAAAGGTTAAAACATATAACTCCTCAAATGGGATTGAAAATTATGAAATACAATGGATTAGTAAGGCATCAGCTGCCCAACGTGCTGGAAGAGCTGGAAGGACAGGGCCTGGGCATTGTTATCGTCTCTATTCTTCTGCAGTTTTTAGTAATATATTCCCTGATTTTTCTCTCGCTGAAATAGCTAAAATACCAGTTGATGGTGTTGTCCTTCTTATGAAATCAATGGGTATCAGTAAGGTGGTCAATTTTCCATTTCCTACTCCTCCTGAGACCTCTGCGGTACTTGAGGCTGAGAGTTGCTTGAAGGCTCTTGAAGCTCTTGATAATGATGGGAGATTGACACCCTTGGGGAAGGCGATGGCTCGCTATCCTTTGAGTCCGCGCCACTCCAGGATGCTACTTACGGTTATTCAGATTATGAGAAACTTGAAAACTTATGATCGAGCAAATCTTGTTCTTGCATATTGTGTTGCGGCAGCTGCAGCTTTGAGCACGTCGAATCCTTTTGTCATGATGTTTGAAGGAAGTCAAATGAAGGATGATTTAGATCAATATGATAGATCTCTTGAACTTGCTGACACAAAAGCTGAAGAAAAAGTGGAAAAGTCATTGAAAAAGAAGCTAAAAGAAGCTGGCAAACTCTCCCGTGAAAAGTTTTCAAATCCTACTAGTGATGCTTTGACGATAGCTTATGCTTTGCAATGTTTTGAACTTTCTGAAAGTCCTGTGGCATTCTGCAACACCTACACATTACATCTAAAAACTATGCAAGAAATGTCCAAGTTGAGAAAGCAGCTATTACAACTTGTTTTCAATCACAGTGGTTCTGCTATTGCTGATTCAGACTTTTCATGGACTAATGGGACTTTGGAGGATGTTGAAGATGTCTGGAGGATCCCGTCCAATAAGCATCCTCTTTTACTGAACGAGGAAGAGATAATTGGCCAAGCAATCTGTGCAGGTTGGCCAGATAGGGTTGCCAAACGTATTAGAGAGATTTCTAAGTCAACTGAAGATGACAGAAAAGAACGCACTGGAAAGTATCAAGCTTGCATGGTAAAAGAAAATGTGTTCCTCAACCGACAGTCGTCTGTTTCTCGTTCAGCCCCAGAATTTTTGGTGTACAATGAATTATTGCGTACAAAACGACCATACATGCATGGATTGACTAGTGTAAAACCTAATTGGCTCGTGAAATATGCTAGTTCCTTGTGTACTTTTTCAGCACCTTTAACCGATCCTAGACCCTATTACGATCCTCAAAATGACACAGTATTTTCATGGGTTGCCCCTACATTTGGCCCTCATCTTTGGAAGCTTCCTTTACACAATGCCCCAATAAAAGATAATGCTCATGGAGTTGCAGTGTTTGCATGTGCTTTGCTTGAAGGGAATGTGTTGCCATGCTTAAAGTATGTGCGCAAGTTCCTGGCAGCTCCTCCCAGTAGTATCTTAAGGCCAGAGGCATTAGGCCAAAAAAGAGTGGGCAATCTTCTTTCTAGACTGAAGTCCAAGAAGATAACTAGTTGTGCCACGTTGAGAGTGGTTTGGAAGGATAATCCTTATGAACTCCATTCAGAAATTCTGGATTGGTTTCAAGAGAGTTATCACAGTCACTTTGAAGACCTTTGGTCACAAATGCTGTGTGAAGTACAAGAGCCCCCAGAACGTCTCTCCAGGAAGTTGAAAAGGGCCAAGAAAAAAATTTGA 4947 42.03 MATNSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLRSDVENHQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYRFALSYHVAILVYVLWRSSWIIRILCPTLTLGTMFYSGLVPALAGVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGLPGFYRGYSTTPITIFFFFIFQSFSVIYRRKCPVPGKIPVVSAVTILYLDCVSKLLAMKSEELTKWHPDRWMKDPKMAAESKRRFQQIQEAYSVLSNKGKRSIYDAGLISFLTDDDDEGFCDFMNEMVPMMKNATQQVEKEKSLLLSKSLETLEKYKIPDDAFLLLRSSVSIGQDETRLEKRSRDIQFSKVGIEFPRNEQQLEKTCSDTSQHESHLGSLEISPRHQLSAEADEDCPCIEKREVSCGLDSFQDLDGGNVVSNQGKSLSALPDEVENICAVVLESGRDLSCTTCTDGDFKGPEIMELIMDLNDLKDERDKIPKVEICTTSDPLPELRLLSRPIVVPVSRPCEVEDKRKDLPIVMMEQEIMEAINENPIVIICGETGCGKTTQVPQFLYEAGFGSFQSSHQRGTIGVTQPRRVAVLATAKRVAYELGVHLGKEVGFQVRYDKKIGGSSSIKFMTDGILLREVQHDFLLKRYSVLILDEAHERSMNTDILIGMLSRVVKLRQDLHVKQRQIMLSGGEISPEDMIFPLKLVLMSATLRVEDFISGGRLFHVSPPIIEVPTRQYPVTVHFSRRTDTVDYIGQAYKKVLAIHKKLPPGGILVFVTGQREVENMCKKLREASKKWIKKTSERNVGIDNGAIEMNSIQNLDMKEINEAFEDHEFSAGEQTDRFSSCDKDELDVNDDASDASYNSETDSELEFSEDDALFDEDDGNLTDVLREDASMASLKAAFDALDGKVAFDKIQVDHSTKGELPAKRVSARMKENGELGFLVGALHVLPLYAMLPAAAQLRVFEEVKERDRLVVIATNVAETSLTIPGIKYVVDTGREKVKTYNSSNGIENYEIQWISKASAAQRAGRAGRTGPGHCYRLYSSAVFSNIFPDFSLAEIAKIPVDGVVLLMKSMGISKVVNFPFPTPPETSAVLEAESCLKALEALDNDGRLTPLGKAMARYPLSPRHSRMLLTVIQIMRNLKTYDRANLVLAYCVAAAAALSTSNPFVMMFEGSQMKDDLDQYDRSLELADTKAEEKVEKSLKKKLKEAGKLSREKFSNPTSDALTIAYALQCFELSESPVAFCNTYTLHLKTMQEMSKLRKQLLQLVFNHSGSAIADSDFSWTNGTLEDVEDVWRIPSNKHPLLLNEEEIIGQAICAGWPDRVAKRIREISKSTEDDRKERTGKYQACMVKENVFLNRQSSVSRSAPEFLVYNELLRTKRPYMHGLTSVKPNWLVKYASSLCTFSAPLTDPRPYYDPQNDTVFSWVAPTFGPHLWKLPLHNAPIKDNAHGVAVFACALLEGNVLPCLKYVRKFLAAPPSSILRPEALGQKRVGNLLSRLKSKKITSCATLRVVWKDNPYELHSEILDWFQESYHSHFEDLWSQMLCEVQEPPERLSRKLKRAKKKI 1648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7600293 7613481 + CmaCh17G010620.1 Cma17g01062 312957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01062 1648 ProSitePatterns Nt-dnaJ domain signature. 333 352 IPR018253 -
Cma17g01062 1648 PANTHER - 587 1631 - -
Cma17g01062 1648 SMART helicmild6 1007 1114 IPR001650 -
Cma17g01062 1648 Pfam Helicase conserved C-terminal domain 1025 1114 IPR001650 -
Cma17g01062 1648 MobiDBLite consensus disorder prediction 916 948 - -
Cma17g01062 1648 SMART AAA_5 621 815 IPR003593 -
Cma17g01062 1648 ProSiteProfiles dnaJ domain profile. 251 356 IPR001623 -
Cma17g01062 1648 ProSiteProfiles Solute carrier (Solcar) repeat profile. 200 280 IPR018108 -
Cma17g01062 1648 MobiDBLite consensus disorder prediction 916 930 - -
Cma17g01062 1648 CDD SF2_C_RHA 1024 1122 - -
Cma17g01062 1648 Gene3D - 1162 1292 - -
Cma17g01062 1648 CDD DnaJ 313 345 IPR001623 -
Cma17g01062 1648 Pfam DEAD/DEAH box helicase 613 791 IPR011545 GO:0003676|GO:0005524
Cma17g01062 1648 Pfam Helicase associated domain (HA2) 1176 1307 IPR007502 GO:0004386
Cma17g01062 1648 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1394 1482 IPR011709 -
Cma17g01062 1648 PANTHER ATP-DEPENDENT RNA HELICASE 587 1631 - -
Cma17g01062 1648 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 727 736 IPR002464 -
Cma17g01062 1648 SMART ultradead3 604 821 IPR014001 -
Cma17g01062 1648 Gene3D - 995 1133 IPR027417 -
Cma17g01062 1648 Gene3D - 815 921 IPR027417 -
Cma17g01062 1648 Gene3D - 591 814 IPR027417 -
Cma17g01062 1648 Gene3D DnaJ domain 309 355 IPR036869 -
Cma17g01062 1648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 616 808 IPR014001 -
Cma17g01062 1648 Pfam Mitochondrial carrier protein 217 264 IPR018108 -
Cma17g01062 1648 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cma17g01062 1648 Pfam Mitochondrial carrier protein 108 172 IPR018108 -
Cma17g01062 1648 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cma17g01062 1648 Gene3D Mitochondrial carrier domain 1 190 IPR023395 -
Cma17g01062 1648 CDD DEXHc_DHX37 606 811 - -
Cma17g01062 1648 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Cma17g01062 1648 SUPERFAMILY Mitochondrial carrier 13 268 IPR023395 -
Cma17g01062 1648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 1216 IPR027417 -
Cma17g01062 1648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 977 1155 IPR001650 -
Cma17g01062 1648 Pfam DnaJ domain 312 353 IPR001623 -
Cma17g01062 1648 SUPERFAMILY Chaperone J-domain 312 376 IPR036869 -
Cma17g01062 1648 Gene3D Mitochondrial carrier domain 212 308 IPR023395 -
Cma17g01062 1648 SMART ha2_5 1175 1309 IPR007502 GO:0004386
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01042 Cma-Chr12:8268381 Cma17g01062 Cma-Chr17:7600293 2.93E-23 dispersed
Cma15g00924 Cma-Chr15:4852185 Cma17g01062 Cma-Chr17:7600293 7.27E-70 dispersed
Cma17g01062 Cma-Chr17:7600293 Cma12g01097 Cma-Chr12:8676894 9.69E-53 dispersed
Cma17g01062 Cma-Chr17:7600293 Cma08g00444 Cma-Chr8:2502721 9.67E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01062 K14780 - csv:101221435 2023.44