Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01065 ATGGCGGCTGCCCCACCCACAACCCCCGCATTCTACTATCTCCTCCTCATCTCCCTGTACATCACCGCCGCTGGAATCTCCACCTCCGCCGCTCCCACCGGTTCGGTGTGCAGCTCGGCCCCAGACCCCTCCTACTGCAAATCGGCCCTCCCAAACCAAACCGGCAATGTGTACTCGTACGGCCGGTCGTCCGTCAGAAAGTCGCTTTCGTCGTCGCAGAAGTTCCTCCGGCTAGTGGAGAAGTATCTCCGATCCCGGTCGTCACTGACGGTGGCGGCAGTTAGATCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATAGATTACCTGACGACGTCGTTCCGGACGGTGAACTCGACGAGCTGGACGTTGCCGGAGATGAAGGCGGAGGACGTGCAGAGCCTGTTGAGTGCGATATTGACGAACCAACAGACATGTTTGGATGGGCTTAAGGCGACGGCGGGGTCTTGGTCTCTCAAAAATGGCCTTTCCCTTCCACTTGACGCTGACACCAAGCTCTACTCTATGTCCTTGGCCTTTTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACAGACATGGACTTCAGCCGGGAGACAGGGCGGGTTCAGCAACGGACGAATGTCATTCAAAATGTCCAGCAGAACCAAAGCGATTTACGAGATGGCAACTCGCCGGAATCTGCTGCAGACCGACGACGGTGGCGACGATCAGATTTCGGTAAGGGACATCGTCGTCGTCAGTCAAGACGGCAGCGGAAATTTCACAACCATTAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGACGGACGGCTATTTCTTGATCTTCGTGGATGCTGGAGTTTATGAAGAATACGTGACGATTGCGAAGAATAAGAGGTACTTGATGATGATCGGAGATGGGATTAATCAGACCGTCGTCACTGGTAATCGGAACGTCGTCGACGGCTGGACCACTTTTAATTCCGCCACATTTGCGGTGGTCGGACCCGGATTCGTCGCAGTAAACATGACATTCAGAAACACCGCCGGAGCAATAAAACACCAAGCCGTGGCCGTCCGGAACAGCGCCGACTTATCAACGTTCTACCTCTGCAGCTTCGAAGGCTACCAAGACACCTTATACACCCACTCCCTCCGCCAATTCTACCGTGATTGCGATATATACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTACAGAACTGCAACATTTACCCGCGCCTGCCGATGGCCAACCAGTTCAACGCCATCACTGCCCAAGGCCGGACCGATCCAAATCAGAACACCGGCACCTCAATCCACAACTGCCGGATCACGGCAGCCGATGACCTCGCAAACAATACCGGCGCCAGAGTGAACACGTTCCTCGGGCGGCCATGGAAGGAGTACTCGAGGACAGTTTATATGCAGAGCTTTATGAATGATTTGATTAATCCGGCGGGGTGGAGGGCTTGGGATGGAGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGGTGGGATTTCATTTGATTGATGATACTGATGCTGGGAATTTCACGGCGGGGAATTTTTTGATGGCGGACGATTGGGTGCCACAGACCGGCGTTCCCTACACCAGCGGCCTCACGGAGTAG 1689 54.41 MAAAPPTTPAFYYLLLISLYITAAGISTSAAPTGSVCSSAPDPSYCKSALPNQTGNVYSYGRSSVRKSLSSSQKFLRLVEKYLRSRSSLTVAAVRSLEDCQLLAGLNIDYLTTSFRTVNSTSWTLPEMKAEDVQSLLSAILTNQQTCLDGLKATAGSWSLKNGLSLPLDADTKLYSMSLAFFTKGWVPKKKKKQTWTSAGRQGGFSNGRMSFKMSSRTKAIYEMATRRNLLQTDDGGDDQISVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVDAGVYEEYVTIAKNKRYLMMIGDGINQTVVTGNRNVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNSADLSTFYLCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVLQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTGARVNTFLGRPWKEYSRTVYMQSFMNDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVNWVGFHLIDDTDAGNFTAGNFLMADDWVPQTGVPYTSGLTE 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7621802 7624405 - CmaCh17G010650.1 Cma17g01065 312960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01065 562 SMART PMEI_2 27 181 IPR006501 GO:0004857
Cma17g01065 562 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Cma17g01065 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 184 IPR035513 -
Cma17g01065 562 PANTHER PECTINESTERASE 24 560 - -
Cma17g01065 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 184 IPR035513 -
Cma17g01065 562 Gene3D - 241 560 IPR012334 -
Cma17g01065 562 CDD PMEI-like_3 35 186 - -
Cma17g01065 562 Pfam Plant invertase/pectin methylesterase inhibitor 35 180 IPR006501 GO:0004857
Cma17g01065 562 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Cma17g01065 562 Pfam Pectinesterase 247 545 IPR000070 GO:0030599|GO:0042545
Cma17g01065 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 24 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01640 Cma-Chr1:11242300 Cma17g01065 Cma-Chr17:7621802 0 dispersed
Cma17g01065 Cma-Chr17:7621802 Cma20g01115 Cma-Chr20:8798768 0 dispersed
Cma17g01065 Cma-Chr17:7621802 Cma17g01067 Cma-Chr17:7630092 4.99E-137 proximal
Cma17g01065 Cma-Chr17:7621802 Cma08g00442 Cma-Chr8:2494265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01065 K01051 - csv:101205321 986.097