Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g01067 | ATGTACGGCCTGAGAAGCAGAGCTCAAAGCTCTTCAAATCCCACCGCCTCCATTTCCGCCATTTTCACCCTCTTTTCCGTTCTTTTCCTTTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAACCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAATCTCTGTTTCTCAAAGCTCTCCTCTTTTCCCCAACTCGCTTCCCTCTCGCCGGAGAAGCTCGCCGGCTCCGCCCTCAACTTCACCAACGACGAGGTTCACGGTGCCTACGCCAATTGCTCCAAGCTCAAGACTCTCTTCTACGGAGGTCTGAATCCCACCGACCGCCGCGCCCTCGATGACTGCCTTGAGCTTCTCGATGGCAGCATTGCCGAACTCCAAACTTCGATTTACGATCTATCCCCGTCGCAGTCCGCCGCCCGCCACTCCCACGATCTGTTGACGTTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTCTTGATGGGTTTTATAATAGTTCCGGGACTGTGAGGAAACGGGTGGAGCTGTATTTGGGGAAAATCGAACAGCATTTGAGTATTGATTTGGCCATGCTGAAGAAAATCCCTGGAGTTAAACGGGCTGCCACGGCGGAAGAGGTGTTGCCGGAGTATGGGGCGGTGAGAGGTGGGTTTCCGATGTGGGTTTCCGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAAACGAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTCACCACTGTCGGCGAGGCTGTCGCCGCCGCTCCAAATTCGAGCACGACCAGGTTTGTAATATACATAAAAGCAGGGGCCTATTTTGAGAATGTGGAAATAGAACGGAAAAAGACAAACTTGATGTTCGTCGGCGACGGGATCGGCAAGACGCTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACCTTCCGATCAGCCACCGTCGCCGCGGTCGGCAATGGGTTCATAGCGAAAGGCATAACATTCGAAAACTTTGCTGGTCCAAGCAAGCACCAAGCCGTAGCCTTCCGAAGCAACTCCGACTTCTCGGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTATGTCCATTCTCTCCGTCAATTCTACCGCGAATGCGACGTCTATGGCACTATTGACTTCATCTTCGGTAACGCTGCAGTCGTCTTCCAAAACTGTAATCTCTATGCTCGAAAACCCAACTCGAACCAACGCAACATATTCACAGCTCAAGGTCGTGAGGATCCTAACCAAAACACCGGAATCTCAATCCTCAATTGCAAGGTTGAAGCCGCCTCTGATTTGATCCCAGTTCTTTCCTCCTTTAGAACTTACTTGGGTCGACCCTGGAAGCTCTACTCGAGGACAATTTTTCTCAAGTCATTCATTGGGCAGTTGGTTGAGCCAGTGGGATGGCTTGAGTGGAATGGGACATTTGCATTAGATACTTTGTATTATGGAGAGTATTTGAATCGCGGACCTGGTTCTAATACAACTGGACGAGTTACTTGGCCAGGTTATCGGGTCATTACTAACTCAACAGAAGCGAGTCAGTTTACAGTGGAAGCGTTTATACAGGGTAGTGAGTGGTTGAACTCGACCGAGATTCCTTTCTTCTCCGGTTTGGCTTGA | 1671 | 50.75 | MYGLRSRAQSSSNPTASISAIFTLFSVLFLFSFKPISSNPQTHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTNDEVHGAYANCSKLKTLFYGGLNPTDRRALDDCLELLDGSIAELQTSIYDLSPSQSAARHSHDLLTLVSAAMTNHRTCLDGFYNSSGTVRKRVELYLGKIEQHLSIDLAMLKKIPGVKRAATAEEVLPEYGAVRGGFPMWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAAVGNGFIAKGITFENFAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFRTYLGRPWKLYSRTIFLKSFIGQLVEPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGSEWLNSTEIPFFSGLA | 556 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 7630092 | 7632774 | + | CmaCh17G010670.1 | Cma17g01067 | 312962 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g01067 | 556 | Pfam | Plant invertase/pectin methylesterase inhibitor | 47 | 194 | IPR006501 | GO:0004857 | |
| Cma17g01067 | 556 | PANTHER | PECTINESTERASE | 42 | 552 | - | - | |
| Cma17g01067 | 556 | PANTHER | PECTINESTERASE | 42 | 552 | - | - | |
| Cma17g01067 | 556 | CDD | PMEI-like_3 | 48 | 201 | - | - | |
| Cma17g01067 | 556 | ProSitePatterns | Pectinesterase signature 2. | 388 | 397 | IPR033131 | - | |
| Cma17g01067 | 556 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 45 | 201 | IPR035513 | - | |
| Cma17g01067 | 556 | SMART | PMEI_2 | 41 | 195 | IPR006501 | GO:0004857 | |
| Cma17g01067 | 556 | SUPERFAMILY | Pectin lyase-like | 242 | 554 | IPR011050 | - | |
| Cma17g01067 | 556 | Gene3D | - | 238 | 555 | IPR012334 | - | |
| Cma17g01067 | 556 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 47 | 200 | IPR035513 | - | |
| Cma17g01067 | 556 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 19 | 198 | IPR006501 | GO:0004857 | |
| Cma17g01067 | 556 | Pfam | Pectinesterase | 244 | 540 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01117 | Cma-Chr2:6634770 | Cma17g01067 | Cma-Chr17:7630092 | 1.42E-176 | dispersed | |
| Cma06g00175 | Cma-Chr6:875934 | Cma17g01067 | Cma-Chr17:7630092 | 3.39E-152 | dispersed | |
| Cma07g00299 | Cma-Chr7:1326603 | Cma17g01067 | Cma-Chr17:7630092 | 1.05E-152 | dispersed | |
| Cma14g01221 | Cma-Chr14:9713508 | Cma17g01067 | Cma-Chr17:7630092 | 1.22E-161 | dispersed | |
| Cma15g01025 | Cma-Chr15:6364490 | Cma17g01067 | Cma-Chr17:7630092 | 4.62E-175 | dispersed | |
| Cma16g00050 | Cma-Chr16:219206 | Cma17g01067 | Cma-Chr17:7630092 | 1.04E-167 | dispersed | |
| Cma17g00648 | Cma-Chr17:5472057 | Cma17g01067 | Cma-Chr17:7630092 | 1.02E-172 | dispersed | |
| Cma17g01067 | Cma-Chr17:7630092 | Cma18g01316 | Cma-Chr18:10105679 | 4.31E-162 | dispersed | |
| Cma20g01115 | Cma-Chr20:8798768 | Cma17g01067 | Cma-Chr17:7630092 | 3.74E-122 | dispersed | |
| Cma17g01065 | Cma-Chr17:7621802 | Cma17g01067 | Cma-Chr17:7630092 | 4.99E-137 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g01067 | K01051 | - | csv:101205557 | 994.956 |