Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01067 ATGTACGGCCTGAGAAGCAGAGCTCAAAGCTCTTCAAATCCCACCGCCTCCATTTCCGCCATTTTCACCCTCTTTTCCGTTCTTTTCCTTTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAACCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAATCTCTGTTTCTCAAAGCTCTCCTCTTTTCCCCAACTCGCTTCCCTCTCGCCGGAGAAGCTCGCCGGCTCCGCCCTCAACTTCACCAACGACGAGGTTCACGGTGCCTACGCCAATTGCTCCAAGCTCAAGACTCTCTTCTACGGAGGTCTGAATCCCACCGACCGCCGCGCCCTCGATGACTGCCTTGAGCTTCTCGATGGCAGCATTGCCGAACTCCAAACTTCGATTTACGATCTATCCCCGTCGCAGTCCGCCGCCCGCCACTCCCACGATCTGTTGACGTTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTCTTGATGGGTTTTATAATAGTTCCGGGACTGTGAGGAAACGGGTGGAGCTGTATTTGGGGAAAATCGAACAGCATTTGAGTATTGATTTGGCCATGCTGAAGAAAATCCCTGGAGTTAAACGGGCTGCCACGGCGGAAGAGGTGTTGCCGGAGTATGGGGCGGTGAGAGGTGGGTTTCCGATGTGGGTTTCCGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAAACGAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTCACCACTGTCGGCGAGGCTGTCGCCGCCGCTCCAAATTCGAGCACGACCAGGTTTGTAATATACATAAAAGCAGGGGCCTATTTTGAGAATGTGGAAATAGAACGGAAAAAGACAAACTTGATGTTCGTCGGCGACGGGATCGGCAAGACGCTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACCTTCCGATCAGCCACCGTCGCCGCGGTCGGCAATGGGTTCATAGCGAAAGGCATAACATTCGAAAACTTTGCTGGTCCAAGCAAGCACCAAGCCGTAGCCTTCCGAAGCAACTCCGACTTCTCGGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTATGTCCATTCTCTCCGTCAATTCTACCGCGAATGCGACGTCTATGGCACTATTGACTTCATCTTCGGTAACGCTGCAGTCGTCTTCCAAAACTGTAATCTCTATGCTCGAAAACCCAACTCGAACCAACGCAACATATTCACAGCTCAAGGTCGTGAGGATCCTAACCAAAACACCGGAATCTCAATCCTCAATTGCAAGGTTGAAGCCGCCTCTGATTTGATCCCAGTTCTTTCCTCCTTTAGAACTTACTTGGGTCGACCCTGGAAGCTCTACTCGAGGACAATTTTTCTCAAGTCATTCATTGGGCAGTTGGTTGAGCCAGTGGGATGGCTTGAGTGGAATGGGACATTTGCATTAGATACTTTGTATTATGGAGAGTATTTGAATCGCGGACCTGGTTCTAATACAACTGGACGAGTTACTTGGCCAGGTTATCGGGTCATTACTAACTCAACAGAAGCGAGTCAGTTTACAGTGGAAGCGTTTATACAGGGTAGTGAGTGGTTGAACTCGACCGAGATTCCTTTCTTCTCCGGTTTGGCTTGA 1671 50.75 MYGLRSRAQSSSNPTASISAIFTLFSVLFLFSFKPISSNPQTHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTNDEVHGAYANCSKLKTLFYGGLNPTDRRALDDCLELLDGSIAELQTSIYDLSPSQSAARHSHDLLTLVSAAMTNHRTCLDGFYNSSGTVRKRVELYLGKIEQHLSIDLAMLKKIPGVKRAATAEEVLPEYGAVRGGFPMWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAAVGNGFIAKGITFENFAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFRTYLGRPWKLYSRTIFLKSFIGQLVEPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGSEWLNSTEIPFFSGLA 556
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 7630092 7632774 + CmaCh17G010670.1 Cma17g01067 312962
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01067 556 Pfam Plant invertase/pectin methylesterase inhibitor 47 194 IPR006501 GO:0004857
Cma17g01067 556 PANTHER PECTINESTERASE 42 552 - -
Cma17g01067 556 PANTHER PECTINESTERASE 42 552 - -
Cma17g01067 556 CDD PMEI-like_3 48 201 - -
Cma17g01067 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cma17g01067 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 201 IPR035513 -
Cma17g01067 556 SMART PMEI_2 41 195 IPR006501 GO:0004857
Cma17g01067 556 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Cma17g01067 556 Gene3D - 238 555 IPR012334 -
Cma17g01067 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 200 IPR035513 -
Cma17g01067 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 198 IPR006501 GO:0004857
Cma17g01067 556 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01117 Cma-Chr2:6634770 Cma17g01067 Cma-Chr17:7630092 1.42E-176 dispersed
Cma06g00175 Cma-Chr6:875934 Cma17g01067 Cma-Chr17:7630092 3.39E-152 dispersed
Cma07g00299 Cma-Chr7:1326603 Cma17g01067 Cma-Chr17:7630092 1.05E-152 dispersed
Cma14g01221 Cma-Chr14:9713508 Cma17g01067 Cma-Chr17:7630092 1.22E-161 dispersed
Cma15g01025 Cma-Chr15:6364490 Cma17g01067 Cma-Chr17:7630092 4.62E-175 dispersed
Cma16g00050 Cma-Chr16:219206 Cma17g01067 Cma-Chr17:7630092 1.04E-167 dispersed
Cma17g00648 Cma-Chr17:5472057 Cma17g01067 Cma-Chr17:7630092 1.02E-172 dispersed
Cma17g01067 Cma-Chr17:7630092 Cma18g01316 Cma-Chr18:10105679 4.31E-162 dispersed
Cma20g01115 Cma-Chr20:8798768 Cma17g01067 Cma-Chr17:7630092 3.74E-122 dispersed
Cma17g01065 Cma-Chr17:7621802 Cma17g01067 Cma-Chr17:7630092 4.99E-137 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01067 K01051 - csv:101205557 994.956