Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01106 ATGGCCGGTATTAAAGTTCACGGAATCCCCACTTCTACAGCCACAGCTAGGGTTCTAGCTGCCCTCTACGAAAAGGGCCTTCAATTCGAGCTTGTTAATGTTAAGTTGCATGAAGGGGAACACAAGAAAGAGCCCTTCCTCTCAATCAATCCCTTTGGTCAAGTTCCTGGATTTAACGATGGAGATCTGACGCTTTTTGAATCCAGGGCGATCACGCAGTATATCTCGGGAAATTATGCTAGCAACGGGACCGAGTTGATTCCGAAAGACTCCAAGAAAGGGGCGGTCGTGTTAACGTGGATCGAGGTGGAGAGCCACCATTTTGACCCAGTAGCCATGAAACTGGTGTTCGAGTTCTGCCTAAAGCCATTATTTGGGCTGGGTGATGCAGATCCTGCAGTGGTTGAGAAAAGCGAAGCTGATTTAGGCCAAGTTCTTGATATCTATGAGAAAAGGCTGTCCGGGTCCAAATACTTGGGAGGGGATTCCTTCAGCTTGGCTGATCTGCACCATCTCCCCGTATTAGGCTACCTGTTGGCTACACCGTCGAAGAAACTGTTTGAATCTAGACCCCATGTCAATGCTTGGGTGGGTGATATCATAGCCAGGCCATCTTGGGCCAAAGTTCTTGCTCTCCGCAAGTGA 645 48.84 MAGIKVHGIPTSTATARVLAALYEKGLQFELVNVKLHEGEHKKEPFLSINPFGQVPGFNDGDLTLFESRAITQYISGNYASNGTELIPKDSKKGAVVLTWIEVESHHFDPVAMKLVFEFCLKPLFGLGDADPAVVEKSEADLGQVLDIYEKRLSGSKYLGGDSFSLADLHHLPVLGYLLATPSKKLFESRPHVNAWVGDIIARPSWAKVLALRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7765553 7766929 - CmaCh17G011060.1 Cma17g01106 313001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01106 214 CDD GST_C_Phi 92 210 IPR034347 -
Cma17g01106 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cma17g01106 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 214 - -
Cma17g01106 214 SUPERFAMILY Thioredoxin-like 2 88 IPR036249 -
Cma17g01106 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
Cma17g01106 214 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 214 - -
Cma17g01106 214 Gene3D - 90 214 - -
Cma17g01106 214 Gene3D Glutaredoxin 1 87 - -
Cma17g01106 214 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cma17g01106 214 Pfam Glutathione S-transferase, C-terminal domain 109 204 IPR004046 -
Cma17g01106 214 SFLD Main (cytGST) 1 212 - -
Cma17g01106 214 CDD GST_N_Phi 4 76 - -
Cma17g01106 214 SFLD Main.5: Phi-like 1 212 - -
Cma17g01106 214 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00410 Cma17g01106 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00735 Cma-Chr4:3726900 Cma17g01106 Cma-Chr17:7765553 1.32E-13 dispersed
Cma08g00410 Cma-Chr8:2346863 Cma17g01106 Cma-Chr17:7765553 4.47E-117 dispersed
Cma12g00385 Cma-Chr12:1988809 Cma17g01106 Cma-Chr17:7765553 1.95E-53 dispersed
Cma16g00767 Cma-Chr16:4206363 Cma17g01106 Cma-Chr17:7765553 3.98E-09 dispersed
Cma17g01106 Cma-Chr17:7765553 Cma02g00643 Cma-Chr2:3895323 6.50E-11 dispersed
Cma17g01106 Cma-Chr17:7765553 Cma08g00409 Cma-Chr8:2344840 4.05E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01106 K00799 - csv:101212291 379.407