Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01111 ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA 471 47.98 MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7785153 7785623 - CmaCh17G011110.1 Cma17g01111 313006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01111 156 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma17g01111 156 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 36 152 - -
Cma17g01111 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Cma17g01111 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma17g01111 156 Gene3D Histone, subunit A 43 155 IPR009072 GO:0046982
Cma17g01111 156 SUPERFAMILY Histone-fold 48 148 IPR009072 GO:0046982
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01111 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204763 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01088 Cma-Chr10:7192352 Cma17g01111 Cma-Chr17:7785153 1.21E-41 dispersed
Cma17g01111 Cma-Chr17:7785153 Cma04g01239 Cma-Chr4:6346452 4.42E-48 dispersed
Cma17g01111 Cma-Chr17:7785153 Cma20g00686 Cma-Chr20:3142972 2.58E-51 transposed
Cma17g01111 Cma-Chr17:7785153 Cma02g00234 Cma-Chr2:1048906 1.88E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00674 . 12 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.1 1.9e-49 193.4
Cma16g00962 . 57 203 CCAAT-HAP3 Transcription Factor Family AT5G47670 64.1 1.2e-48 190.7
Cma20g00686 . 6 124 CCAAT-HAP3 Transcription Factor Family AT5G47670 58.8 3.4e-38 156.0
Cma02g00234 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.3e-37 154.1
Cma06g00674 . 1 140 CCAAT-HAP3 Transcription Factor Family AT1G21970 65.2 1.9e-49 193.4
Cma16g00962 . 86 245 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.8 9.6e-49 191.0
Cma02g00234 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.4 9.3e-56 213.8
Cma20g00686 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.5 2.1e-55 212.6
Cma06g00678 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.9 3.1e-51 198.7
Cma16g00965 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.5 9.4e-48 187.2
Cma16g00666 . 24 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.9e-47 184.1
Cma04g00791 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.3 2.6e-45 179.1
Cma14g00188 . 986 1079 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.8e-43 172.9
Cma06g00350 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.8e-43 172.9
Cma04g01239 . 22 143 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 4.1e-43 171.8
Cma04g00263 . 460 590 CCAAT-HAP3 Transcription Factor Family AT4G14540 63.4 6.5e-41 164.5
Cma17g01111 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.8e-38 154.1
Cma14g00188 . 965 1079 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.0e-48 188.3
Cma06g00350 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.0e-48 188.3
Cma04g01239 . 12 128 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.8 8.9e-48 187.2
Cma04g00263 . 447 575 CCAAT-HAP3 Transcription Factor Family AT2G38880 75.2 1.2e-47 186.8
Cma06g00678 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.9 3.9e-43 171.8
Cma02g00234 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.5e-42 169.1
Cma20g00686 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.3e-42 168.3
Cma16g00965 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 6.2e-41 164.5
Cma16g00666 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.1 8.1e-41 164.1
Cma04g00791 . 12 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.8 1.8e-40 162.9
Cma17g01111 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 1.3e-38 156.8
Cma17g01111 . 45 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 85.6 1.4e-43 173.3
Cma06g00678 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.1 7.1e-40 161.0
Cma02g00234 . 18 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.3 2.1e-39 159.5
Cma20g00686 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.6e-39 158.3
Cma16g00965 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 1.0e-38 157.1
Cma16g00666 . 27 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.1e-38 154.8
Cma04g00791 . 31 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 2.5e-37 152.5
Cma14g00188 . 965 1131 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.9 9.7e-59 223.8
Cma06g00350 . 1 157 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.1 3.4e-56 215.3
Cma04g01239 . 12 156 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.8 3.2e-54 208.8
Cma04g00263 . 453 603 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.5 7.4e-51 197.6
Cma02g00234 . 6 125 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.2 1.0e-44 177.2
Cma20g00686 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.7 4.0e-44 175.3
Cma06g00678 . 9 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.4 1.8e-41 166.4
Cma16g00965 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.4 2.4e-41 166.0
Cma16g00666 . 26 131 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 5.3e-41 164.9
Cma04g00791 . 30 123 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.7 8.5e-39 157.5
Cma17g01111 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.4e-36 150.2
Cma16g00666 . 14 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.4
Cma20g00686 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 4.9e-44 175.3
Cma02g00234 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 1.4e-43 173.7
Cma04g00791 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.1 9.3e-43 171.0
Cma14g00188 . 971 1084 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.7e-41 166.8
Cma06g00350 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 2.3e-41 166.4
Cma06g00678 . 8 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.9 5.1e-41 165.2
Cma16g00965 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 1.5e-40 163.7
Cma04g01239 . 38 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 3.6e-39 159.1
Cma17g01111 . 46 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.8e-38 156.8
Cma04g00263 . 473 579 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.4 1.7e-36 150.2
Cma02g00234 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 4.8e-51 198.4
Cma20g00686 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.8 1.8e-50 196.4
Cma06g00678 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 9.0e-50 194.1
Cma16g00965 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 193.0
Cma16g00666 . 22 127 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.1e-44 177.2
Cma04g00791 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.3 3.7e-43 172.2
Cma04g01239 . 38 148 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.3e-43 171.4
Cma14g00188 . 975 1088 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 6.9e-42 167.9
Cma06g00350 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 9.1e-42 167.5
Cma04g00263 . 473 595 CCAAT-HAP3 Transcription Factor Family AT5G47640 64.3 2.9e-40 162.5
Cma17g01111 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.4 4.2e-39 158.7
Cma14g00188 . 976 1131 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.2 1.1e-57 220.3
Cma06g00350 . 12 157 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.8 3.2e-57 218.8
Cma04g01239 . 23 186 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.9 2.1e-53 206.1
Cma04g00263 . 458 625 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.1 8.9e-52 200.7
Cma02g00234 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.6e-45 178.7
Cma20g00686 . 6 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.9 6.9e-44 174.5
Cma06g00678 . 9 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.1 9.9e-43 170.6
Cma16g00666 . 15 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 9.3e-41 164.1
Cma16g00965 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 9.3e-41 164.1
Cma04g00791 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 7.9e-40 161.0
Cma17g01111 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36698 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01111 Cma_Chr17 FPKM 22.955414 28.9058 0.776164 2.763275 0.0 0.0 0.0 0.0 0.128485 0.0