Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01111 ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA 471 47.98 MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7785153 7785623 - CmaCh17G011110.1 Cma17g01111 313006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01111 156 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma17g01111 156 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 36 152 - -
Cma17g01111 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Cma17g01111 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma17g01111 156 Gene3D Histone, subunit A 43 155 IPR009072 GO:0046982
Cma17g01111 156 SUPERFAMILY Histone-fold 48 148 IPR009072 GO:0046982
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cma17g01111 156 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01088 Cma-Chr10:7192352 Cma17g01111 Cma-Chr17:7785153 1.21E-41 dispersed
Cma17g01111 Cma-Chr17:7785153 Cma04g01239 Cma-Chr4:6346452 4.42E-48 dispersed
Cma17g01111 Cma-Chr17:7785153 Cma20g00686 Cma-Chr20:3142972 2.58E-51 transposed
Cma17g01111 Cma-Chr17:7785153 Cma02g00234 Cma-Chr2:1048906 1.88E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36698 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01111 K08065 - csv:101204763 264.618