Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g01131 | ATGGATTCATTTTTGGGAAACACCGTGATGAAGTTGGCTTTGAAATCAGACCCTGAAGAGCATCGCGTTGCATTGTTTGTATTACTTCTTTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCAATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAGCTTTTCTTCATTTATGTTCTTCCACCCATAATTTTTAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGGAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGCGATTTCATTTTTCATCATATCACTTGGTTCACTACATATATTCAAGAAATTGGATATTGGCTTCTTAGACGTGGGCGATTATTTTGCCCTAGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTGCTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAATGCCATTCAGCTTCTTGGAAATTTTTCCTATTTATTTTTTATGAGCACCTTGCTGGGAGTGATAGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCGACTGATCGGGAGGTCGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCCCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACGCTCTCATTTGTTTCAGAGATTTTCATCTTCTTATACGTTGGCATGGATGCCTTGGATATTGAGAAGTGGAAAATTGTTGGCCGAAGGCCTTGGACATCGGCTGGTGTGAGTCTAATACTGCTTGGTTTAGTCCTTGCTGCAAGGGCAGCTTTTGTATTTCCGCTCTCGTTTATATCGAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGTACACACAGCTGCAAGAGAATGCGATTATGATTACTAGCACGATCACGATTGTTCTCGTCACTAATGTGGTATTTGGACTCTTAACTAAACCCATTGTAAGGTACATGCTTTCACTGCATGATACACCAATAGATGGCACATTTGTAGCAGCAGATTCTCCAGTTAAGTCGCTGACCGATGTTCTTTTGTCCGGTGGTGAAGATGTCGAAGCCGATGTTGGAGAATCGAACATTCCCCGTCCTACCAGCTTACGTATGCTGTTAACAACTCCAACTCACTCCGTCCATTACTATTGGCGGATGTTCGATGATCGATACATGCGTCCTGTATTTGGTGGAAGAGGCTTCGTACCTTTCATCCCTGGCTCACCAACTGAGAAGTATATCCACTGA | 1611 | 41.96 | MDSFLGNTVMKLALKSDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTAISFFIISLGSLHIFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNAIQLLGNFSYLFFMSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKIVGRRPWTSAGVSLILLGLVLAARAAFVFPLSFISNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGYTQLQENAIMITSTITIVLVTNVVFGLLTKPIVRYMLSLHDTPIDGTFVAADSPVKSLTDVLLSGGEDVEADVGESNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH | 536 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7885629 | 7891787 | + | CmaCh17G011310.1 | Cma17g01131 | 313026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g01131 | 536 | Pfam | Sodium/hydrogen exchanger family | 26 | 440 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | Gene3D | - | 143 | 194 | - | - | |
Cma17g01131 | 536 | TIGRFAM | b_cpa1: sodium/hydrogen exchanger 3 | 22 | 480 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cma17g01131 | 536 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 121 | 153 | IPR000595 | - | |
Cma17g01131 | 536 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 9 | 535 | - | - | |
Cma17g01131 | 536 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 9 | 535 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01251 | Cma-Chr11:8327881 | Cma17g01131 | Cma-Chr17:7885629 | 0 | dispersed | |
Cma13g00323 | Cma-Chr13:3735510 | Cma17g01131 | Cma-Chr17:7885629 | 5.61E-24 | dispersed | |
Cma13g00324 | Cma-Chr13:3743086 | Cma17g01131 | Cma-Chr17:7885629 | 7.84E-21 | dispersed | |
Cma17g01131 | Cma-Chr17:7885629 | Cma18g00624 | Cma-Chr18:5526159 | 1.08E-42 | dispersed | |
Cma17g01131 | Cma-Chr17:7885629 | Cma17g01132 | Cma-Chr17:7891846 | 4.58E-13 | tandem | |
Cma17g01131 | Cma-Chr17:7885629 | Cma08g01201 | Cma-Chr8:7385483 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g01131 | - | K14724 | csv:101206431 | 956.822 |