Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01131 ATGGATTCATTTTTGGGAAACACCGTGATGAAGTTGGCTTTGAAATCAGACCCTGAAGAGCATCGCGTTGCATTGTTTGTATTACTTCTTTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCAATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAGCTTTTCTTCATTTATGTTCTTCCACCCATAATTTTTAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGGAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGCGATTTCATTTTTCATCATATCACTTGGTTCACTACATATATTCAAGAAATTGGATATTGGCTTCTTAGACGTGGGCGATTATTTTGCCCTAGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTGCTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAATGCCATTCAGCTTCTTGGAAATTTTTCCTATTTATTTTTTATGAGCACCTTGCTGGGAGTGATAGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCGACTGATCGGGAGGTCGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCCCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACGCTCTCATTTGTTTCAGAGATTTTCATCTTCTTATACGTTGGCATGGATGCCTTGGATATTGAGAAGTGGAAAATTGTTGGCCGAAGGCCTTGGACATCGGCTGGTGTGAGTCTAATACTGCTTGGTTTAGTCCTTGCTGCAAGGGCAGCTTTTGTATTTCCGCTCTCGTTTATATCGAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGTACACACAGCTGCAAGAGAATGCGATTATGATTACTAGCACGATCACGATTGTTCTCGTCACTAATGTGGTATTTGGACTCTTAACTAAACCCATTGTAAGGTACATGCTTTCACTGCATGATACACCAATAGATGGCACATTTGTAGCAGCAGATTCTCCAGTTAAGTCGCTGACCGATGTTCTTTTGTCCGGTGGTGAAGATGTCGAAGCCGATGTTGGAGAATCGAACATTCCCCGTCCTACCAGCTTACGTATGCTGTTAACAACTCCAACTCACTCCGTCCATTACTATTGGCGGATGTTCGATGATCGATACATGCGTCCTGTATTTGGTGGAAGAGGCTTCGTACCTTTCATCCCTGGCTCACCAACTGAGAAGTATATCCACTGA 1611 41.96 MDSFLGNTVMKLALKSDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTAISFFIISLGSLHIFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNAIQLLGNFSYLFFMSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKIVGRRPWTSAGVSLILLGLVLAARAAFVFPLSFISNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGYTQLQENAIMITSTITIVLVTNVVFGLLTKPIVRYMLSLHDTPIDGTFVAADSPVKSLTDVLLSGGEDVEADVGESNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7885629 7891787 + CmaCh17G011310.1 Cma17g01131 313026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01131 536 Pfam Sodium/hydrogen exchanger family 26 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma17g01131 536 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma17g01131 536 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma17g01131 536 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma17g01131 536 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma17g01131 536 Gene3D - 143 194 - -
Cma17g01131 536 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 22 480 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cma17g01131 536 ProSiteProfiles cAMP/cGMP binding motif profile. 121 153 IPR000595 -
Cma17g01131 536 PANTHER SODIUM/HYDROGEN EXCHANGER 9 535 - -
Cma17g01131 536 PANTHER SODIUM/HYDROGEN EXCHANGER 9 535 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01251 Cma-Chr11:8327881 Cma17g01131 Cma-Chr17:7885629 0 dispersed
Cma13g00323 Cma-Chr13:3735510 Cma17g01131 Cma-Chr17:7885629 5.61E-24 dispersed
Cma13g00324 Cma-Chr13:3743086 Cma17g01131 Cma-Chr17:7885629 7.84E-21 dispersed
Cma17g01131 Cma-Chr17:7885629 Cma18g00624 Cma-Chr18:5526159 1.08E-42 dispersed
Cma17g01131 Cma-Chr17:7885629 Cma17g01132 Cma-Chr17:7891846 4.58E-13 tandem
Cma17g01131 Cma-Chr17:7885629 Cma08g01201 Cma-Chr8:7385483 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01131 - K14724 csv:101206431 956.822