Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01201 ATGGGTAACGTCGATTACGTGTACCCATCGGCGGCGGAAGGCGGCGAGAGCTTGCACCAGGCGGCGATTCCACCGCCGCAGCCGTTCGTGAAGTCGCTGAAGAATTGTCTTAAGGAGACGTTCTTCCCAGACGACCCGCTCCGGCAGTTCAAGAACCAGCCGGCGAGGAGGAAGATTGTTCTGGGTTTGCAGTACTTTTTCCCAGTAGTGGAATGGGGGCCTCGTTATAATCTTGGGTTCCTGAAATCGGATCTCATCTCCGGTATCACCATTGCCAGCCTCGCCATTCCTCAGGGCATTAGCTACGCCAAGCTCGCTAACTTGCCGCCTATTCTCGGCCTCTATTCGAGTTTTATTCCGCCGCTGATATATGCAATGATGGGAAGCTCGAAGGATTTGGCTGTCGGAACGGTGGCGGTGGCGTCGCTTCTGATGGGCGCAATGTTAGGGGTGGAGGTTAACGCCGCCCAAAATCCCACTCTTTATCTCCACCTTGCTTTCACCGCCACTTTCTTCGCCGGAGTATTCCAGGCCTCCTTAGGCCTCTTAAGGCTAGGGTTCATCGTGGATTTTTTGTCACACGCAACCATTGTCGGATTCATGGGCGGCGCTGCCACCGTGGTGTGCTTGCAACAGCTCAAGGGAATCCTTGGTCTCACCCATTTCACCCACGCCACCGATCTTGTTTCTGTTCTCCGTTCTGTTTTTTCTCAAATTCACGAGTGGAGATGGCAAAGTGGGGTATTGGGATGCGGTTTTCTGCTCTTCCTCCTCATCACCAAATACTTTAGTAAGAAAAAACCGAAATTCTTTTGGATATCAGCAATGGCACCTTTAACGTCGGTGATTTTAGGAAGCCTTCTAGTGTTTCTCGCTCATGCGGAAAAGCACGGAGTCGAAGTGATTGGAGAATTAAAGAAAGGGCTAAATCCAGTGTCTATTACAGATTTGGTGTTGGTGTCATCTTATCTTTCCACAACGATTAAAACTGGTATCATCACTGGGGTTATAGCTCTTGCGGAAGGAATAGCAGTAGGAAGAAGTTTTGCGATGTTCAAGCATTACAACATCGATGGCAACAAGGAAATGGTGGCTATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCCTGCTATCTCACCACAGGCCCGTTTTCGCGATCGGCTGTGAACTACAATGCAGGATGCAAAACGGCGGTATCGAACGTGGTAATGGCGATTGCAGTGATGCTGACGCTGTTGTTCTTGACTCCTCTGTTCTACTACACTCCTATTGTTGTGCTTTCTTCTATCATCATTTCCGCCATGCTTGGCCTCATCGATTACGACGCCGCTATTCACTTGTGGAAGGTCGATAAGTTCGATTTCCTTGTCTGCATTGCTGCTTATGCTGGTGTCGTCTTTGCTAGTGTTGAAATTGGCTTGGTCATTGCGGTGGTGATATCTCTGCTAAGACTACTTTTGTTCGTTGCGAGGCCGAGGACACTTGTGCTTGGAAACCTTCCCAATTCCACGGTTTACAGGAACGTCGAGCAATACCCAAATGCCGATAATGTTCCCGGCATTCTCATACTTGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAAGCTTCCGGCGAAAGTACCTTACAATATGTAGTTCTGGACATGAGTGCTGTTGGCAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAACATTTTAACTAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGAGCTGAGGTGATGAAGAAGCTGGACAAGGGCAAGTTCATCGAAAGCCTCGGACACGAATGGATCTATCTTACTATCGCTGAAGCTGTAGCAGCCTGCAACTATAGGCTTCACTCTTGCAAACCAAACCTTGTAACTGATGAGAAAGCAGAGCCATGGAACAATGTCTAA 1977 48.36 MGNVDYVYPSAAEGGESLHQAAIPPPQPFVKSLKNCLKETFFPDDPLRQFKNQPARRKIVLGLQYFFPVVEWGPRYNLGFLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLMGAMLGVEVNAAQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMGGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQIHEWRWQSGVLGCGFLLFLLITKYFSKKKPKFFWISAMAPLTSVILGSLLVFLAHAEKHGVEVIGELKKGLNPVSITDLVLVSSYLSTTIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFYYTPIVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIAAYAGVVFASVEIGLVIAVVISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNADNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEIKNILTRRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTIAEAVAACNYRLHSCKPNLVTDEKAEPWNNV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8290197 8294902 - CmaCh17G012010.1 Cma17g01201 313096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01201 658 Pfam STAS domain 513 631 IPR002645 -
Cma17g01201 658 ProSitePatterns SLC26A transporters signature. 110 131 IPR018045 GO:0008271|GO:0008272
Cma17g01201 658 TIGRFAM sulP: sulfate permease 68 631 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma17g01201 658 Pfam Sulfate permease family 81 461 IPR011547 GO:0016021
Cma17g01201 658 CDD STAS_SulP_like_sulfate_transporter 513 628 - -
Cma17g01201 658 Gene3D STAS domain 492 639 IPR036513 -
Cma17g01201 658 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 651 - -
Cma17g01201 658 SUPERFAMILY SpoIIaa-like 517 636 IPR036513 -
Cma17g01201 658 ProSiteProfiles STAS domain profile. 512 635 IPR002645 -
Cma17g01201 658 PANTHER SULFATE TRANSPORTER 2 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00684 Cma-Chr8:4212615 Cma17g01201 Cma-Chr17:8290197 0 dispersed
Cma17g00816 Cma-Chr17:6397306 Cma17g01201 Cma-Chr17:8290197 0 dispersed
Cma14g01741 Cma-Chr14:12745410 Cma17g01201 Cma-Chr17:8290197 0 wgd
Cma17g01201 Cma-Chr17:8290197 Cma06g01377 Cma-Chr6:8979400 0 wgd
Cma17g01201 Cma-Chr17:8290197 Cma08g00327 Cma-Chr8:1868717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01201 K17471 - csv:101222260 1189.1