Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01203 ATGCTACAAGAGATGAATCCTCTGTTTCCAGTTAAGGAAGAGTTTCCTGGATCGAATTCGTCGGAGACCGACAGAGAGCGATTGGCTATGGCTCCTCCGATTCCGATGGAGGGCCTTCACGATGCCGGTCCACCGCCGTTTCTGACGAAGACGTTTGAAATCGTTGATGATTTTAATACCGATCATGTGATTTCTTGGAGCTTTGGGGGAAATAGCTTCGTCGTTTGGGATCCTCATTGCTTCTCCACTGAATTGCTTCCCAGATTCTTTAAGCATAATAACTTTTCCAGTTTCGTTCGGCAGCTTAATACTTACGGCTTTAGAAAGATAGATCCAGATAGATGGGAGTTCGCAAATGAGGGATTTCTCAGAGGCCAAAAGCATCTTCTTAAGAACATAAAGAGGAGGAGGGCAACTTATCACCACCACCAAACTCCCCAATCACAAGCATCGAGTGGAGCTTGTGTAGAGGTTGGTCAATTTGGAGTAGATGCAGAAATGGATCGTTTAAAACGTGACAAGCAAGTGCTAATGATGGAGTTAGTGAAGCTAAGGCAAGAGCAACAGAACACGAGAGCGTATCTTCAAGCAATGGAGCAAAGGCTTAGAGGAACTGAAATTAAGCAGAGACAAATGATGAATTTCTTAGCAAGAGCTATGCAAAACCCATCGTTCATTCAGCAATTACTCCAGCAGAAGGAGAAGAGGAAGGTGCTTGAAGAAGCCATAACTAGGAAAAGAAGAAGGCCTATTCAGCAAGGTGGGAAACAGAGCGGTGGTGGTAGTGGGAGATTCTTGGGTGAAGGTTCAAGCACCATCAAGATTGAGCCTCTTGAATCTGAAGAATATGGGTTTGGGATTACAGAGCTAGAAGCACTTGCCTTGGAGATGCAGGGGCTTGGCAGGGCAAGACATGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAAGATCATCTACCTCCACCAGCGGATGGTGATAAAGTACTTGATGAAGGGTTTTGGGAAGAATTGTTCAGCGAAAGGTTGGAGGTAGCCAGTGGTGACGATGAAGATGTGAAAGTTCTGGCTGATCGGTTGGGCTATTTGGGCTCAGACCCACGATAG 1119 46.02 MLQEMNPLFPVKEEFPGSNSSETDRERLAMAPPIPMEGLHDAGPPPFLTKTFEIVDDFNTDHVISWSFGGNSFVVWDPHCFSTELLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQKHLLKNIKRRRATYHHHQTPQSQASSGACVEVGQFGVDAEMDRLKRDKQVLMMELVKLRQEQQNTRAYLQAMEQRLRGTEIKQRQMMNFLARAMQNPSFIQQLLQQKEKRKVLEEAITRKRRRPIQQGGKQSGGGSGRFLGEGSSTIKIEPLESEEYGFGITELEALALEMQGLGRARHEEEEEEEEEEEEEEEEDHLPPPADGDKVLDEGFWEELFSERLEVASGDDEDVKVLADRLGYLGSDPR 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8307360 8309389 + CmaCh17G012030.1 Cma17g01203 313098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01203 372 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 MobiDBLite consensus disorder prediction 307 324 - -
Cma17g01203 372 Gene3D - 40 137 IPR036388 -
Cma17g01203 372 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 349 IPR027725 -
Cma17g01203 372 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 MobiDBLite consensus disorder prediction 300 337 - -
Cma17g01203 372 MobiDBLite consensus disorder prediction 1 24 - -
Cma17g01203 372 MobiDBLite consensus disorder prediction 243 269 - -
Cma17g01203 372 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma17g01203 372 SUPERFAMILY Winged helix DNA-binding domain 43 136 IPR036390 -
Cma17g01203 372 Coils Coil 290 324 - -
Cma17g01203 372 Coils Coil 167 201 - -
Cma17g01203 372 Coils Coil 229 249 - -
Cma17g01203 372 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 12 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01203 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101208010 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00089 Cma-Chr5:384437 Cma17g01203 Cma-Chr17:8307360 2.20E-91 dispersed
Cma06g00639 Cma-Chr6:3140360 Cma17g01203 Cma-Chr17:8307360 1.82E-88 dispersed
Cma12g00642 Cma-Chr12:3416893 Cma17g01203 Cma-Chr17:8307360 8.43E-92 dispersed
Cma16g01175 Cma-Chr16:8997737 Cma17g01203 Cma-Chr17:8307360 4.96E-87 dispersed
Cma17g01203 Cma-Chr17:8307360 Cma06g00445 Cma-Chr6:2054179 1.83E-58 dispersed
Cma14g01746 Cma-Chr14:12764441 Cma17g01203 Cma-Chr17:8307360 1.66E-94 wgd
Cma17g01203 Cma-Chr17:8307360 Cma19g00021 Cma-Chr19:123363 1.10E-144 wgd
Cma17g01203 Cma-Chr17:8307360 Cma06g01370 Cma-Chr6:8944268 6.87E-106 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g01203 . 44 232 HSF AT4G17750 59.2 1.7e-60 231.1
Cma05g00089 . 18 243 HSF AT4G17750 51.8 5.0e-60 229.6
Cma19g00021 . 40 269 HSF AT4G17750 50.4 1.8e-57 221.1
Cma14g01746 . 43 225 HSF AT4G17750 59.3 1.2e-56 218.4
Cma02g00053 . 12 110 HSF AT4G17750 71.7 2.6e-40 164.1
Cma05g00178 CCT 20 118 HSF AT4G17750 71.7 8.4e-39 159.1
Cma01g01832 CCT,CST 20 118 HSF AT4G17750 69.7 4.1e-38 156.8
Cma09g00239 CCT,CST 21 118 HSF AT4G17750 69.4 1.6e-37 154.8
Cma06g00639 CST 18 519 HSF AT5G16820 50.1 2.3e-102 370.2
Cma17g01203 . 45 232 HSF AT5G16820 61.8 6.4e-60 229.2
Cma19g00021 . 41 248 HSF AT5G16820 53.3 2.3e-57 220.7
Cma12g00642 CST 41 224 HSF AT5G16820 57.3 4.3e-56 216.5
Cma14g01746 . 44 227 HSF AT5G16820 57.6 8.1e-55 212.2
Cma05g00089 . 43 251 HSF AT5G16820 51.4 1.1e-54 211.8
Cma06g01370 . 41 245 HSF AT5G16820 50.5 1.6e-47 188.0
Cma05g01399 CST 77 264 HSF AT5G16820 52.1 9.0e-46 182.2
Cma07g00159 CCT,ECH 270 452 HSF AT5G16820 52.4 7.6e-45 179.1
Cma02g00053 . 13 112 HSF AT5G16820 78.0 9.6e-40 162.2
Cma16g01175 CST 1 518 HSF AT1G32330 52.7 1.9e-120 430.3
Cma06g00639 CST 13 516 HSF AT1G32330 52.3 1.1e-115 414.5
Cma17g01203 . 33 232 HSF AT1G32330 56.5 1.7e-60 231.1
Cma14g01746 . 20 233 HSF AT1G32330 50.2 1.4e-54 211.5
Cma06g01370 . 25 252 HSF AT1G32330 51.9 7.1e-51 199.1
Cma02g00053 . 11 106 HSF AT1G32330 76.0 2.5e-40 164.1
Cma05g00178 CCT 20 117 HSF AT1G32330 71.4 5.3e-38 156.4
Cma01g01832 CCT,CST 22 117 HSF AT1G32330 71.9 2.0e-37 154.5
Cma17g01203 . 45 232 HSF AT3G02990 62.6 6.2e-60 229.2
Cma14g01746 . 44 254 HSF AT3G02990 54.4 9.0e-59 225.3
Cma05g00089 . 43 243 HSF AT3G02990 53.6 1.9e-56 217.6
Cma12g00642 CST 41 217 HSF AT3G02990 56.0 1.8e-54 211.1
Cma02g00053 . 13 106 HSF AT3G02990 77.7 9.3e-40 162.2
Cma17g01203 . 33 228 HSF AT2G26150 61.7 2.8e-65 246.5
Cma14g01746 . 32 245 HSF AT2G26150 54.6 2.6e-63 240.0
Cma06g00639 CST 8 243 HSF AT2G26150 56.5 8.4e-62 235.0
Cma16g01175 CST 3 243 HSF AT2G26150 55.4 1.2e-60 231.1
Cma05g01399 CST 60 297 HSF AT2G26150 50.4 1.1e-58 224.6
Cma19g00021 . 29 233 HSF AT2G26150 51.0 7.3e-58 221.9
Cma06g01370 . 29 288 HSF AT2G26150 50.8 8.1e-57 218.4
Cma02g00053 . 2 111 HSF AT4G18880 67.3 5.0e-42 169.5
Cma06g01370 . 41 170 HSF AT4G18880 56.0 3.4e-38 156.8
Cma06g01196 CST 3 466 HSF AT4G13980 51.2 3.2e-117 419.5
Cma14g01914 CST 6 422 HSF AT4G13980 51.6 2.7e-103 373.2
Cma02g00053 . 4 111 HSF AT4G13980 65.7 3.0e-38 157.1
Cma17g01203 . 33 229 HSF AT5G43840 51.8 1.1e-51 201.1
Cma14g01746 . 32 224 HSF AT5G43840 52.8 1.6e-50 197.2
Cma12g00642 CST 29 220 HSF AT5G43840 53.1 4.3e-48 189.1
Cma19g00021 . 29 344 HSF AT3G22830 52.7 1.0e-87 321.2
Cma14g01746 . 5 248 HSF AT3G22830 59.6 1.2e-78 291.2
Cma05g00089 . 31 241 HSF AT3G22830 56.4 5.6e-65 245.7
Cma06g00639 CST 9 242 HSF AT3G22830 55.6 2.0e-62 237.3
Cma16g01175 CST 13 242 HSF AT3G22830 55.2 5.8e-62 235.7
Cma05g01399 CST 65 271 HSF AT3G22830 50.2 1.7e-53 207.6
Cma02g00053 . 5 105 HSF AT3G22830 69.3 4.9e-37 152.9
Cma19g00021 . 29 324 HSF AT3G51910 50.3 1.4e-67 253.8
Cma14g01746 . 31 243 HSF AT3G51910 57.9 3.9e-62 235.7
Cma05g00089 . 31 248 HSF AT3G51910 52.0 3.0e-54 209.5
Cma12g00642 CST 29 221 HSF AT3G51910 54.4 2.5e-53 206.5
Cma05g00089 . 20 231 HSF AT3G63350 51.9 4.2e-51 199.1
Cma12g00642 CST 18 228 HSF AT3G63350 50.9 3.0e-49 193.0
Cma17g01203 . 46 234 HSF AT1G67970 51.6 5.3e-46 182.6
Cma03g00981 CST 2 297 HSF AT4G36990 52.7 8.1e-71 264.6
Cma07g00708 CST 2 248 HSF AT4G36990 51.6 2.3e-57 219.9
Cma16g00136 CCT,CST 15 113 HSF AT4G36990 65.7 1.3e-36 151.0
Cma02g01477 . 16 329 HSF AT4G11660 51.2 7.0e-78 288.5
Cma01g01832 CCT,CST 16 119 HSF AT4G11660 74.0 1.0e-44 178.3
Cma05g00178 CCT 16 121 HSF AT4G11660 71.7 2.3e-44 177.2
Cma09g00239 CCT,CST 16 119 HSF AT4G11660 72.1 2.5e-43 173.7
Cma03g00981 CST 2 108 HSF AT4G11660 71.0 1.6e-42 171.0
Cma07g00708 CST 5 102 HSF AT4G11660 69.4 3.2e-38 156.8
Cma16g01175 CST 33 126 HSF AT4G11660 69.1 1.7e-36 151.0
Cma03g00056 . 16 215 HSF AT2G41690 55.0 1.5e-52 203.8
Cma06g00893 . 1251 1450 HSF AT2G41690 51.4 3.5e-46 182.6
Cma01g01832 CCT,CST 1 338 HSF AT1G46264 52.3 1.1e-88 324.3
Cma05g00178 CCT 19 380 HSF AT1G46264 52.3 9.0e-88 321.2
Cma09g00239 CCT,CST 1 332 HSF AT1G46264 52.3 1.1e-85 314.3
Cma11g00891 CCT 5 186 HSF AT1G46264 51.9 4.2e-53 206.1
Cma10g00883 CCT 19 193 HSF AT1G46264 53.6 3.3e-50 196.4
Cma03g00981 CST 4 198 HSF AT1G46264 50.2 6.3e-49 192.2
Cma06g00639 CST 33 138 HSF AT1G46264 72.6 8.2e-41 165.2
Cma16g01175 CST 33 136 HSF AT1G46264 73.1 1.1e-40 164.9
Cma02g00053 . 5 105 HSF AT1G46264 68.3 7.2e-37 152.1
Cma14g01914 CST 6 103 HSF AT1G46264 70.4 9.4e-37 151.8
Cma17g01203 . 36 154 HSF AT1G46264 57.7 1.2e-36 151.4
Cma06g01370 . 32 136 HSF AT1G46264 64.8 2.1e-36 150.6
Cma11g00606 CCT,CST 11 178 HSF AT3G24520 67.3 4.7e-62 235.7
Cma05g01337 CCT 11 181 HSF AT3G24520 64.9 1.4e-61 234.2
Cma17g01203 . 44 232 HSF AT4G17750 59.2 1.7e-60 231.1
Cma05g00089 . 18 243 HSF AT4G17750 51.8 5.0e-60 229.6
Cma19g00021 . 40 269 HSF AT4G17750 50.4 1.8e-57 221.1
Cma14g01746 . 43 225 HSF AT4G17750 59.3 1.2e-56 218.4
Cma02g00053 . 12 110 HSF AT4G17750 71.7 2.6e-40 164.1
Cma05g00178 CCT 20 118 HSF AT4G17750 71.7 8.4e-39 159.1
Cma01g01832 CCT,CST 20 118 HSF AT4G17750 69.7 4.1e-38 156.8
Cma09g00239 CCT,CST 21 118 HSF AT4G17750 69.4 1.6e-37 154.8
Cma06g00639 CST 18 519 HSF AT5G16820 50.1 2.3e-102 370.2
Cma17g01203 . 45 232 HSF AT5G16820 61.8 6.4e-60 229.2
Cma19g00021 . 41 248 HSF AT5G16820 53.3 2.3e-57 220.7
Cma12g00642 CST 41 224 HSF AT5G16820 57.3 4.3e-56 216.5
Cma14g01746 . 44 227 HSF AT5G16820 57.6 8.1e-55 212.2
Cma05g00089 . 43 251 HSF AT5G16820 51.4 1.1e-54 211.8
Cma06g01370 . 41 245 HSF AT5G16820 50.5 1.6e-47 188.0
Cma05g01399 CST 77 264 HSF AT5G16820 52.1 9.0e-46 182.2
Cma07g00159 CCT,ECH 270 452 HSF AT5G16820 52.4 7.6e-45 179.1
Cma02g00053 . 13 112 HSF AT5G16820 78.0 9.6e-40 162.2
Cma16g01175 CST 1 518 HSF AT1G32330 52.7 1.9e-120 430.3
Cma06g00639 CST 13 516 HSF AT1G32330 52.3 1.1e-115 414.5
Cma17g01203 . 33 232 HSF AT1G32330 56.5 1.7e-60 231.1
Cma14g01746 . 20 233 HSF AT1G32330 50.2 1.4e-54 211.5
Cma06g01370 . 25 252 HSF AT1G32330 51.9 7.1e-51 199.1
Cma02g00053 . 11 106 HSF AT1G32330 76.0 2.5e-40 164.1
Cma05g00178 CCT 20 117 HSF AT1G32330 71.4 5.3e-38 156.4
Cma01g01832 CCT,CST 22 117 HSF AT1G32330 71.9 2.0e-37 154.5
Cma17g01203 . 45 232 HSF AT3G02990 62.6 6.2e-60 229.2
Cma14g01746 . 44 254 HSF AT3G02990 54.4 9.0e-59 225.3
Cma05g00089 . 43 243 HSF AT3G02990 53.6 1.9e-56 217.6
Cma12g00642 CST 41 217 HSF AT3G02990 56.0 1.8e-54 211.1
Cma02g00053 . 13 106 HSF AT3G02990 77.7 9.3e-40 162.2
Cma17g01203 . 33 228 HSF AT2G26150 61.7 2.8e-65 246.5
Cma14g01746 . 32 245 HSF AT2G26150 54.6 2.6e-63 240.0
Cma06g00639 CST 8 243 HSF AT2G26150 56.5 8.4e-62 235.0
Cma16g01175 CST 3 243 HSF AT2G26150 55.4 1.2e-60 231.1
Cma05g01399 CST 60 297 HSF AT2G26150 50.4 1.1e-58 224.6
Cma19g00021 . 29 233 HSF AT2G26150 51.0 7.3e-58 221.9
Cma06g01370 . 29 288 HSF AT2G26150 50.8 8.1e-57 218.4
Cma02g00053 . 2 111 HSF AT4G18880 67.3 5.0e-42 169.5
Cma06g01370 . 41 170 HSF AT4G18880 56.0 3.4e-38 156.8
Cma06g01196 CST 3 466 HSF AT4G13980 51.2 3.2e-117 419.5
Cma14g01914 CST 6 422 HSF AT4G13980 51.6 2.7e-103 373.2
Cma02g00053 . 4 111 HSF AT4G13980 65.7 3.0e-38 157.1
Cma17g01203 . 33 229 HSF AT5G43840 51.8 1.1e-51 201.1
Cma14g01746 . 32 224 HSF AT5G43840 52.8 1.6e-50 197.2
Cma12g00642 CST 29 220 HSF AT5G43840 53.1 4.3e-48 189.1
Cma19g00021 . 29 344 HSF AT3G22830 52.7 1.0e-87 321.2
Cma14g01746 . 5 248 HSF AT3G22830 59.6 1.2e-78 291.2
Cma05g00089 . 31 241 HSF AT3G22830 56.4 5.6e-65 245.7
Cma06g00639 CST 9 242 HSF AT3G22830 55.6 2.0e-62 237.3
Cma16g01175 CST 13 242 HSF AT3G22830 55.2 5.8e-62 235.7
Cma05g01399 CST 65 271 HSF AT3G22830 50.2 1.7e-53 207.6
Cma02g00053 . 5 105 HSF AT3G22830 69.3 4.9e-37 152.9
Cma19g00021 . 29 324 HSF AT3G51910 50.3 1.4e-67 253.8
Cma14g01746 . 31 243 HSF AT3G51910 57.9 3.9e-62 235.7
Cma05g00089 . 31 248 HSF AT3G51910 52.0 3.0e-54 209.5
Cma12g00642 CST 29 221 HSF AT3G51910 54.4 2.5e-53 206.5
Cma05g00089 . 20 231 HSF AT3G63350 51.9 4.2e-51 199.1
Cma12g00642 CST 18 228 HSF AT3G63350 50.9 3.0e-49 193.0
Cma17g01203 . 46 234 HSF AT1G67970 51.6 5.3e-46 182.6
Cma03g00981 CST 2 297 HSF AT4G36990 52.7 8.1e-71 264.6
Cma07g00708 CST 2 248 HSF AT4G36990 51.6 2.3e-57 219.9
Cma16g00136 CCT,CST 15 113 HSF AT4G36990 65.7 1.3e-36 151.0
Cma02g01477 . 16 329 HSF AT4G11660 51.2 7.0e-78 288.5
Cma01g01832 CCT,CST 16 119 HSF AT4G11660 74.0 1.0e-44 178.3
Cma05g00178 CCT 16 121 HSF AT4G11660 71.7 2.3e-44 177.2
Cma09g00239 CCT,CST 16 119 HSF AT4G11660 72.1 2.5e-43 173.7
Cma03g00981 CST 2 108 HSF AT4G11660 71.0 1.6e-42 171.0
Cma07g00708 CST 5 102 HSF AT4G11660 69.4 3.2e-38 156.8
Cma16g01175 CST 33 126 HSF AT4G11660 69.1 1.7e-36 151.0
Cma03g00056 . 16 215 HSF AT2G41690 55.0 1.5e-52 203.8
Cma06g00893 . 1251 1450 HSF AT2G41690 51.4 3.5e-46 182.6
Cma01g01832 CCT,CST 1 338 HSF AT1G46264 52.3 1.1e-88 324.3
Cma05g00178 CCT 19 380 HSF AT1G46264 52.3 9.0e-88 321.2
Cma09g00239 CCT,CST 1 332 HSF AT1G46264 52.3 1.1e-85 314.3
Cma11g00891 CCT 5 186 HSF AT1G46264 51.9 4.2e-53 206.1
Cma10g00883 CCT 19 193 HSF AT1G46264 53.6 3.3e-50 196.4
Cma03g00981 CST 4 198 HSF AT1G46264 50.2 6.3e-49 192.2
Cma06g00639 CST 33 138 HSF AT1G46264 72.6 8.2e-41 165.2
Cma16g01175 CST 33 136 HSF AT1G46264 73.1 1.1e-40 164.9
Cma02g00053 . 5 105 HSF AT1G46264 68.3 7.2e-37 152.1
Cma14g01914 CST 6 103 HSF AT1G46264 70.4 9.4e-37 151.8
Cma17g01203 . 36 154 HSF AT1G46264 57.7 1.2e-36 151.4
Cma06g01370 . 32 136 HSF AT1G46264 64.8 2.1e-36 150.6
Cma11g00606 CCT,CST 11 178 HSF AT3G24520 67.3 4.7e-62 235.7
Cma05g01337 CCT 11 181 HSF AT3G24520 64.9 1.4e-61 234.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36702 PF00447 HSF_DNA-bind 2.80E-31 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01203 Cma_Chr17 FPKM 18.041534 19.595215 2.504615 2.154835 6.407334 5.840629 6.023732 6.967594 7.58142 6.509605