Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01205 ATGTTTTCTCCAACAATTATGTCCAATTCAACTTCTTTGTCTGATCAAGCCACCATCTTTTCCAATATTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCAGATGCAGAAGTGATAGCACTTTCACCAACAACACTTCTTGCAACAAATAGATTTGTGTGTGAAATTTGCAATAAGGGTTTCCAAAGGGATCAAAACTTGCAGCTACACAGAAGAGGCCACAAACTTCCATGGAAATTGAAGCAAAGAAGCAGCAAAGAAGTGAAGAAGAAGGCGTATGTGTGCCCAGAGGAAGCTTGTGTTCATCATAATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTCCAGAAAACATGGAGAAAAGAAATGGAAATGCCTTAAATGCTCCAAACTCTACGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGAACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCCAGGAAAGATAGGTTCGTAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAGAGTGCACGGCTCTCGGCTAACCAATTGGCCATAGCTTCGGCCGCCTCGGGTGCCATGGGTGTTGACGTAAACCTGTCTTCGACCACTGTTGCTCAATCTCTCTTCCCTTTTGGCAACCATTATCAGTTCTCGAATTCGCTGATACCGTCGTCTCCATCGTCACTGTCGTTGTCGTCGTCGCAAACCCTTGTGTCCCTAAACCCTTGGAACCATCCCCTAAACCCTAATCATACCCTTCAAATGATCAAGCCTGAAGACTCAAATTCTCACCATTTTCACCAAATTCCAAATTTGCCCCTCTCCGATGACTCCTCCAATAATAACAATTACCACCCTTTTGGTCTAATTCAAGATCACCACCACAAGGCGAGCTCATCCTCCTCCTCCTCCTCTTCCATGATAACCTCACCCTTTAGGAACCTCCACGTGTCGGTGCAACCGGCCTCAAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTACAAAAGGCCGCAACAGTTGGCGTTGGCGTTGGCGCTGCAAAATCAGGTCAGCATCAGCCCGAGTCAGCGGGTCATATAACTCACTTCAACATCCCCGAGTTCCGCCCATCAAATCATATTAGCTCGCTGAGTCAACTCGGTCCAGACTACGCCACGTGGCAGAAGAGTGACCGGTTGACCAGGGACTTTCTCGGTCTTACCGGACATGGGAACGGCACCGGAAGTGGTTCCGGCAGTGGTGGATCTGTGCATTTTAGCATGATCGTTAAAGATATGCTAATGTACGCAGATGGTAAGCCTCACAATAATAATAATAATAGTAGTAATGGTTTTGGATATGGGGAGGCAGCTGCCAACGGAACTTGGGAAGACTGTTGA 1437 46.83 MFSPTIMSNSTSLSDQATIFSNIHHPPQKLKKKRSLPGNPDPDAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHKLPWKLKQRSSKEVKKKAYVCPEEACVHHNPSRALGDLTGIKKHYSRKHGEKKWKCLKCSKLYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDRFVTHRAFCDALAEESARLSANQLAIASAASGAMGVDVNLSSTTVAQSLFPFGNHYQFSNSLIPSSPSSLSLSSSQTLVSLNPWNHPLNPNHTLQMIKPEDSNSHHFHQIPNLPLSDDSSNNNNYHPFGLIQDHHHKASSSSSSSSSMITSPFRNLHVSVQPASNAATSAHLSATALLQKAATVGVGVGAAKSGQHQPESAGHITHFNIPEFRPSNHISSLSQLGPDYATWQKSDRLTRDFLGLTGHGNGTGSGSGSGGSVHFSMIVKDMLMYADGKPHNNNNNSSNGFGYGEAAANGTWEDC 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8313467 8316465 + CmaCh17G012050.1 Cma17g01205 313100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01205 478 MobiDBLite consensus disorder prediction 22 43 - -
Cma17g01205 478 Gene3D Classic Zinc Finger 93 184 - -
Cma17g01205 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cma17g01205 478 Pfam Zinc-finger double-stranded RNA-binding 60 83 IPR022755 -
Cma17g01205 478 SMART c2h2final6 101 131 IPR013087 -
Cma17g01205 478 SMART c2h2final6 60 82 IPR013087 -
Cma17g01205 478 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 20 459 - -
Cma17g01205 478 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cma17g01205 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 459 - -
Cma17g01205 478 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Cma17g01205 478 Gene3D Classic Zinc Finger 59 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01205 Cma-Chr17:8313467 Cma01g00059 Cma-Chr1:264054 7.84E-107 dispersed
Cma17g01205 Cma-Chr17:8313467 Cma08g00323 Cma-Chr8:1849759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36703 PF12171 zf-C2H2_jaz 5.80E-05 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01205 K25870 - csv:101208253 630.172