Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g01213 | ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGTAGGAGCTGCTGCTGCTGCTGCGGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGCGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCAACTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACAGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACTGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCAATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG | 939 | 51.65 | MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLVGAAAAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASTVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8381348 | 8384471 | + | CmaCh17G012130.1 | Cma17g01213 | 313108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g01213 | 312 | SMART | finulus | 162 | 211 | IPR011598 | GO:0046983 | |
Cma17g01213 | 312 | Gene3D | - | 151 | 213 | IPR036638 | GO:0046983 | |
Cma17g01213 | 312 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 156 | 205 | IPR011598 | GO:0046983 | |
Cma17g01213 | 312 | Pfam | Helix-loop-helix DNA-binding domain | 161 | 205 | IPR011598 | GO:0046983 | |
Cma17g01213 | 312 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 154 | 215 | IPR036638 | GO:0046983 | |
Cma17g01213 | 312 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 300 | - | - | |
Cma17g01213 | 312 | MobiDBLite | consensus disorder prediction | 136 | 160 | - | - | |
Cma17g01213 | 312 | PANTHER | TRANSCRIPTION FACTOR UNE12-RELATED | 7 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01153 | Cma-Chr12:9092596 | Cma17g01213 | Cma-Chr17:8381348 | 3.47E-47 | dispersed | |
Cma17g01213 | Cma-Chr17:8381348 | Cma08g00243 | Cma-Chr8:1373639 | 4.25E-22 | dispersed | |
Cma11g00990 | Cma-Chr11:5277672 | Cma17g01213 | Cma-Chr17:8381348 | 2.00E-96 | transposed | |
Cma17g01213 | Cma-Chr17:8381348 | Cma08g00303 | Cma-Chr8:1736157 | 1.55E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36704 | PF00010 | HLH | 1.20E-07 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g01213 | - | - | csv:101218718 | 497.664 |