Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01213 ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGTAGGAGCTGCTGCTGCTGCTGCGGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGCGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCAACTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACAGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACTGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCAATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 939 51.65 MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLVGAAAAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASTVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8381348 8384471 + CmaCh17G012130.1 Cma17g01213 313108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01213 312 SMART finulus 162 211 IPR011598 GO:0046983
Cma17g01213 312 Gene3D - 151 213 IPR036638 GO:0046983
Cma17g01213 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Cma17g01213 312 Pfam Helix-loop-helix DNA-binding domain 161 205 IPR011598 GO:0046983
Cma17g01213 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 215 IPR036638 GO:0046983
Cma17g01213 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 300 - -
Cma17g01213 312 MobiDBLite consensus disorder prediction 136 160 - -
Cma17g01213 312 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01153 Cma-Chr12:9092596 Cma17g01213 Cma-Chr17:8381348 3.47E-47 dispersed
Cma17g01213 Cma-Chr17:8381348 Cma08g00243 Cma-Chr8:1373639 4.25E-22 dispersed
Cma11g00990 Cma-Chr11:5277672 Cma17g01213 Cma-Chr17:8381348 2.00E-96 transposed
Cma17g01213 Cma-Chr17:8381348 Cma08g00303 Cma-Chr8:1736157 1.55E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36704 PF00010 HLH 1.20E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01213 - - csv:101218718 497.664