Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01219 ATGGAAGAGGTTGAAGATGCTAATAGGGAAGCTGTTGAGAGTGTTCATAAAGTATTGAATCTGTTGACTGTGACATCGCCTCAAGATCACTCGAAGATTACGCGTTGTTTAATGGCGGGAACTGGAGAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTGTTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGATCATGAACTTTCATCTTGATTCCTCGCCTTCCCAATCAATGTTCTTAGAATCTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGTAGAAATTTGCAGATGGGTCCTCACTCATCTTTGGAATTGAACTCAAATGTCAAACACTGTTCAATCCAACAGATTCAACCTCAATCTGCTGCTGTTTATCATCATCTGCTTCAGAACAGGGTGTTGTTGAATACTCAGCAGCCTGAAATGGGGTATCTTAGGAGCAATAGTGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCGTTTATGTCTTCCTTGAGCATTGATGGCAGTGTGGCAAACTTGGATGGGAGTGGCTTTCATTTGATTGGGACGCCTCGGTCTTCCGATCAGAATTCACGCCATAAAAGGAAGTGTTGTAGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAAATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCCATTAGTAACAAGCTTGCTGATATCCCTCCTGATGATTTCTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGCTCTCCTCACCCGAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGGAAGCATGTTGAGCGGTGTCTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATAGCTTCTCAATTCCCAAATACTTGA 987 43.97 MEEVEDANREAVESVHKVLNLLTVTSPQDHSKITRCLMAGTGEAVFKFRKVLCLLDSVGLGHARVRKKKKIMNFHLDSSPSQSMFLESSSPNCRMDLLQGRNLQMGPHSSLELNSNVKHCSIQQIQPQSAAVYHHLLQNRVLLNTQQPEMGYLRSNSGVNLNFDSSSCTQHTMSSTRSFMSSLSIDGSVANLDGSGFHLIGTPRSSDQNSRHKRKCCRRGEDGSVKCGSSGKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIASQFPNT 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8415383 8418312 - CmaCh17G012190.1 Cma17g01219 313114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01219 328 ProSiteProfiles WRKY domain profile. 255 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g01219 328 SMART WRKY_cls 260 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g01219 328 Pfam WRKY DNA -binding domain 262 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g01219 328 Gene3D WRKY domain 246 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma17g01219 328 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 109 328 - -
Cma17g01219 328 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 88 - -
Cma17g01219 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 88 IPR044810 GO:0003700
Cma17g01219 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 109 328 IPR044810 GO:0003700
Cma17g01219 328 Pfam Plant zinc cluster domain 213 258 IPR018872 -
Cma17g01219 328 SUPERFAMILY WRKY DNA-binding domain 258 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01219 Cma-Chr17:8415383 Cma19g00062 Cma-Chr19:331030 1.66E-121 dispersed
Cma17g01219 Cma-Chr17:8415383 Cma02g01770 Cma-Chr2:9870246 8.41E-82 wgd
Cma17g01219 Cma-Chr17:8415383 Cma08g00314 Cma-Chr8:1790125 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36707 PF03106 WRKY 6.00E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01219 - - csv:101216822 533.487