Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01237 ATGAAAGAAGTTCATGATCTTGATTTGCATGCAGAAATGGATCAAACACAGATGTGGGTTCATGATCAAAATCAACAACAACATCAAAATCATCAAATTTTTCTGTCGGATAATGATGATGATGCTTTGATTTTCTACTCTGATTTCCCTCCGTTGCCGGATTTTCCTTGCATGTCGTCTTCTTCGTCGTCTACTCCCGCTCCGGTCAAGCCCACGGTGTCGTTGTCGTCCTCGTCGTCGACCTCCTCCTCCTCCTCCGCCACTTCATGGGCAGTTTTGAAATCTGATGCTGATGAAATTGCTGAGGAAATCAGAATTAATGATAACAATTCTGCCTCCGCCACCACCACCGCCGCCGCCGCCGCTTCCGCCGCCGTGTCATCCCCTTCGGCGGTGAAAACTGAGTTTAACGGCGGGGATTGTACGGATGACATGATGATGGAGACATTTGGATACATGGATTTACTTGAAGATAGCAATGAGTTTTTTGATCCGACTTGTATTTTTCAGAACGAAGAACAACAACAACAACAACGAGACCCTTTAGAGGATTTGCGATTGGAAAGCTTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTAAGAGTAATGATAATGGAGGGAAGCAAAACGTCGCCGCCGCCGCCGCCGCGGCGGAGGAGGAGGATATGGCGAAGGTGTTTTTGGAGTGGCTTAGGAGTAATAGAGAGACGGTTTCTGCTGATGATTTGAGAAATGTTAGGATCAAAAAAGCTACTATTGAAAGCGCCGCCCGCCGCCTTGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTGAATGGGTTCAAACCAATCATCTTCAGAAGAGGAAATTCAAAGAGATCAATGAAAATGAAGCCAATTTGATAGGGTTTCAAAGCCCTAATTCCTCCGGCCACCCCTGGATCCAAACACCGCCGCCATTACCGCCTCCGCCTTTGTATTCTCCACCGATTCTTGGGTATGTCCAAGGTGGTGGTGGGGAAGCGTATGGCAGTGGCCGTGGTTATTCCGATCATTACCAATTACTTGACTCCTCATTGTCGTGGAGTAATAGTAATAGTAATAGTAATTTGCCGGGGGCAGTTCAACTGCCCCGGTCGCATTTCAACTCGTTTGTTGATAATTTTGTGGCTGGGCCGCCTTTGCCACCGCCGCAACAACAAGGTTTTGCAGCGGGGTACGGTAGGGGGCAGCAGTACCCTTATATGGGTCAGTACTTTCAAGCACAGGGCGGGGATAATGGTTTGGTTAGATTGGATTCATCGGCGACAAAGGAGGCTCGGAAGAAGCGAATGGCAAGACAGCGGAGATTCTCTGCCCACCACCGCCACAATCACGGTGGACACCACGGCAACCACCACCACCACCACAGCAACAGCCACCAACATCAGATGAATCCTAATGCTTCAGATCATGGCAACATGGCTACAACTTCTCAGTCAAATGCTGGAAACTGGGTCTACTGGCCGTCCTCCACCGATGTAGTTCCAGCCGACTCGCCGGTGCACGCAGTCAATTGGTCTAATTCTTCCCTGCAAAACCAGCCCTATCCTCCCCGGATCCAATCGGAGCGACGACAGGGATGGAAACCAGAGAAAAATTTAAGGTTTCTTTTACAAAAAGTATTGAAGCAAAGCGATGTGGGAAATCTGGGGAGAATTGTATTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCCATGGAAGACATTGGAACTTCTAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGCGACTTTGTGAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCCGACGTCAAGTGCGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGATAGCAAGAGGGGAGGAAAATCGCAAAGAAGCCATTCGACTGCCGGTGTGAACGCCAACGGCTTGTCATCTTCACCGCCGACCCCCGCCACCCCGAGGAGGCACTGA 2091 48.73 MKEVHDLDLHAEMDQTQMWVHDQNQQQHQNHQIFLSDNDDDALIFYSDFPPLPDFPCMSSSSSSTPAPVKPTVSLSSSSSTSSSSSATSWAVLKSDADEIAEEIRINDNNSASATTTAAAAASAAVSSPSAVKTEFNGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEEQQQQQRDPLEDLRLESFEEVEMEDLMMMHGGKSNDNGGKQNVAAAAAAAEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLEWVQTNHLQKRKFKEINENEANLIGFQSPNSSGHPWIQTPPPLPPPPLYSPPILGYVQGGGGEAYGSGRGYSDHYQLLDSSLSWSNSNSNSNLPGAVQLPRSHFNSFVDNFVAGPPLPPPQQQGFAAGYGRGQQYPYMGQYFQAQGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHNHGGHHGNHHHHHSNSHQHQMNPNASDHGNMATTSQSNAGNWVYWPSSTDVVPADSPVHAVNWSNSSLQNQPYPPRIQSERRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRGGKSQRSHSTAGVNANGLSSSPPTPATPRRH 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8487680 8490972 + CmaCh17G012370.1 Cma17g01237 313132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01237 696 SUPERFAMILY DNA-binding pseudobarrel domain 552 648 IPR015300 -
Cma17g01237 696 CDD BfiI_C_EcoRII_N_B3 551 652 - -
Cma17g01237 696 Gene3D - 549 665 IPR015300 -
Cma17g01237 696 MobiDBLite consensus disorder prediction 520 535 - -
Cma17g01237 696 SMART B3_2 553 655 IPR003340 GO:0003677
Cma17g01237 696 MobiDBLite consensus disorder prediction 443 475 - -
Cma17g01237 696 MobiDBLite consensus disorder prediction 476 496 - -
Cma17g01237 696 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 687 IPR044800 GO:0003700
Cma17g01237 696 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 687 - -
Cma17g01237 696 MobiDBLite consensus disorder prediction 520 541 - -
Cma17g01237 696 Pfam B3 DNA binding domain 554 650 IPR003340 GO:0003677
Cma17g01237 696 MobiDBLite consensus disorder prediction 655 696 - -
Cma17g01237 696 MobiDBLite consensus disorder prediction 57 88 - -
Cma17g01237 696 MobiDBLite consensus disorder prediction 670 696 - -
Cma17g01237 696 ProSiteProfiles B3 DNA-binding domain profile. 553 655 IPR003340 GO:0003677
Cma17g01237 696 MobiDBLite consensus disorder prediction 437 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02252 Cma-Chr4:15722559 Cma17g01237 Cma-Chr17:8487680 1.52E-38 dispersed
Cma15g00779 Cma-Chr15:3869619 Cma17g01237 Cma-Chr17:8487680 5.14E-38 dispersed
Cma17g01237 Cma-Chr17:8487680 Cma08g00060 Cma-Chr8:349224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36709 PF02362 B3 1.80E-17 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01237 - - cmax:111488128 1199.11