Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01238 ATGGCGATTCTAAAGCTCTTTTCTCTCTGCATTTGCTTCTTCTTATTGATCAGAGCCCCTGTACGTGGTGATTCCTTACATTTCCCTTCTTCTTCTTCTTCCTCCTCTTCTGTTTCTTCTGATGTTCTACTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGCGACACTCAAAACTTACTTTTATCTTCATGGAATTACTCTTTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAGTGGAACTCTTCTGGTCTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTTTTCAAAGACCCTTCCCTTCATGTTCTCTCTCTGCAACTTCCATCTGCTAATCTTACTGGTTTATTGCCCAAGGAGCTTGGTGAGTTTACTATGCTCCAAAGCCTCTATCTAAGCATAAACTCTTTGACTGGAACCATTCCACTTGAACTCGGTTACAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTGTTGACCGGAGCTCTTCCACCGTCGATATGGAATCTGTGTGATAAACTTGTTTCTGTCAGGCTTCATGGAAATTCATTATTTGGGTCTCTGTCGGAGCCGGCTTTACCAAATTCCACCTGCAAGAATTTGAAGACTTTGGATTTGGGCAACAACCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGGTTTCAGGGTCTGAAAGAGCTTGATCTTGGAAAGAATTTATTGTCTGGAAAAATCCCACAGAGCTTAAGCCAATTAGAGCTGGAGAAGTTGAACCTTTCAAAAAACAATTTCAGTGGAATATTGCCTGTTTTTGATAACTCAAAGTTTGGCGTTGAGGCTTTTGAAGGGAACAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGTTGTGCAGGACCTTCCCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATTGGCTTGATGACTGGGACGGTGGTTTTAGCTTCGTTGCTTATTGGTTATATGCAAAACAAGAAGAAGAATAGGAGTGAGAGTGAAGATGACATTGAGGAAGGAGAAGATCAAGAGAATGGCGGCAGTGATGGAAAGCTCATTTTGTTTCAGGGTGGAGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACTATATATAAGGCAAAGCTTGCTGATGGAGGTACCATTGCTCTTAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGCGATTAAACAATTGGGAAAGATTCGTCATGAGAACTTGATTCCATTGAGAGCTTTCTATCAGGGGAGGAGAGGAGAGAAGCTCCTCATTTATGACTATCTCCCTATCAGAACTTTGCATGATTTTCTACATGAGTCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCATTAGGCATCGCTCGAGGTCTAGCTCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGAAATGTTAGATCAAAAAACGTGCTTGTGGATGACTTCTTTGCAGCGAGACTGATGGAGTTCGGGCTCGACAAGCTAATGATCCCATCGGTAGCTGACGAAATTGTGTCGCTTGCAAAATCAGACGGGTACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAATTCCAGAACAGATGTGTATGCATTTGGAATCTTGCTATTGGAAATTCTGATTGGGAAGAAGCCAGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTGGCTGTTTTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTGTTGAAAGGGATTAGAAGTCTCATGGAAGATGGAATCGTTCAGGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCCGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGCTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACTGAAACAAGAAGTGAAATTGGTACGCCTTTTTGA 2034 43.41 MAILKLFSLCICFFLLIRAPVRGDSLHFPSSSSSSSSVSSDVLLLLGKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSSGTLLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGLLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCDKLVSVRLHGNSLFGSLSEPALPNSTCKNLKTLDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGKIPQSLSQLELEKLNLSKNNFSGILPVFDNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKNRSESEDDIEEGEDQENGGSDGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSAIKQLGKIRHENLIPLRAFYQGRRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLMEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSLMEDGIVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8497906 8500521 - CmaCh17G012380.1 Cma17g01238 313133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01238 677 SUPERFAMILY Protein kinase-like (PK-like) 382 653 IPR011009 -
Cma17g01238 677 Gene3D Phosphorylase Kinase; domain 1 359 453 - -
Cma17g01238 677 Gene3D Transferase(Phosphotransferase) domain 1 455 670 - -
Cma17g01238 677 Gene3D Ribonuclease Inhibitor 43 203 IPR032675 -
Cma17g01238 677 MobiDBLite consensus disorder prediction 658 677 - -
Cma17g01238 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 28 677 - -
Cma17g01238 677 MobiDBLite consensus disorder prediction 338 358 - -
Cma17g01238 677 Gene3D Ribonuclease Inhibitor 204 301 IPR032675 -
Cma17g01238 677 Pfam Protein tyrosine and serine/threonine kinase 381 652 IPR001245 GO:0004672|GO:0006468
Cma17g01238 677 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 28 677 - -
Cma17g01238 677 Pfam Leucine rich repeat 209 267 IPR001611 GO:0005515
Cma17g01238 677 MobiDBLite consensus disorder prediction 657 677 - -
Cma17g01238 677 ProSiteProfiles Protein kinase domain profile. 377 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g01238 677 SUPERFAMILY L domain-like 55 273 - -
Cma17g01238 677 Coils Coil 332 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00213 Cma-Chr16:967058 Cma17g01238 Cma-Chr17:8497906 8.56E-67 dispersed
Cma17g01238 Cma-Chr17:8497906 Cma04g00125 Cma-Chr4:592508 2.07E-13 dispersed
Cma17g01238 Cma-Chr17:8497906 Cma08g00063 Cma-Chr8:361202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69253 PF07714 PK_Tyr_Ser-Thr 1.70E-24 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01238 - - cmo:103497530 1194.1