Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g01271 | ATGGCGCAACGATCACACGTACCAGCTTTTGGAAATTGGGAAAACGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCTCTCCACCGCCACGCAAAGCCATCGGGAAGAGAGAGCCCTGTGGTGGAGGGCAAGGGCTTCGACGGAGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCATGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTTAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAATGTTCATAACCGAAGACCCGACGACAGTGCCAAGAACCGAAAGCCGTCTCTTTTTCTCTTTTACACGTTCAGTTCTGCGGTGGAATTTTGTTTTGTGTTTGTTTCTGGATGTTCGATTGAAGGGATTATGGTGAGGGAACAACGAGTTGAATCGTTTTATACTAAGCTTCGTGAATCTGTGGCGGCTTCTTCTTTGTCTCCTCTACTTATTTTTCCATCGACTTCTGATGTAGATTCTCTCTGTGCCTTGAAAATTATTTTTCAAGTTCTTGAATCCGATTCGGTTCGCTACGCTTGTTATCCTGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGTCCTAGTTTGACTTCCTCGTCTTCTGATCCCATTTCGATCCTTTTGATTAATTGGGGTTGTCATCGAGATCTTCGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCGTGTGTTTGTTGTTGATAGTCATCGCCCAATTCATCTTCACAATCTAAGTGATCAGAATGAACAAGTGGTTGTGCTTTATACGAAAGACGACGAGCTCCAGGCCGATTTAGCTTATGATTTTGACGTTTCTGCTTTGGCGAGTGCGAGCGATTTGAACAGCGATGATGAGATTGATGAGGAATCGGATAGTGATGACGACAATGATAGCGAAAGCGACAATGAAGAGAGACGTGGATCAAGGAAAAGGAGAAGGGTTGAAAAGGAAAATGAAGATGATCCTGTTCAGATATTTAGGAAATTGAAAAGGGGATACTATCAAATGGGTACCTTCCATGGTAGGCCTTCAGGGTGTTTGATGTATGACCTATCTCATTCGTTGAGGAAGAACACGAATGAATTACTGTGGCTGGCTTGTGTGTCTTTAACAGATCAGTTTGTTCATGAAAGATTGACGGAGGAGAGGTACCAAGCTGGGGTTATGGAGCTAGAACAACACATAAACAGTTCAGGAAACTTAAATGCTGTTAACTCAGTTACTCTTAAAGATGGCACCAAGATCCGAGCCCCTGATGCATCTAGAATCACTTATGATGATGAACCCAGATTAATGCTCTTACAGGAGTGGAATTTGTTTGATTCAATGCTTTGTTCTTCATACATTGCAACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTCAAATTGCTTCTAGCACGTATGGGATTTGCACTTGTGGATTGCCAACAAAAGTTCCAATACATGAATATTGAAGTGAAACGAAAGATGAAAGACGAATTCGAGCGATACCTTCCCGAATACGGCCTAACCGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTATAGCTCAAAAGTGTCAGCAGCAGATGTAGTATATGGGGTCACTGCGTTGCTTGAGTCCTTTGTCAAATCGGATGGCACTAGTGCTTCCAAACAGTTCGGAGTAGCTTATGATGCATTATCATTGGGCAATCTTGACAAGCTCAAAGAAGGAATGCAGCAGGCAATCAAGGTCCAGAGATCAATTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGTTGTATAAGAAGTGGTAGGAAATTTCGTTGGGTGAAGCTTGAAGATTCCATAGACACCAAATTGTTGGGATATCCTCAAGCACTCACGAAGTTCTGCTACTTTATAATGGATGCATTGCGAGAGAAAGGAGCCAGAATGAAGCCTTTGCTATGTGCTTGCATATCTCAAGAGCCCAACAAAGTATTGATCGTTGGAGTTTGTGGGAAGCCGAGGCTGGGGGCATCTCAAGGCAATGCATTTGGGAGAGCATTCCGGAATGCGGCGGAGGAAATTGGCGGAGAGTTTTTCCACGAGATGTTTGAATCTTCATGGATTCTTCTTGAAAAAACTTCAGTCAACTCTTTCATGGTCAGATTGACTCAGAAGCTCTAG | 2502 | 45.6 | MAQRSHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNRRPDDSAKNRKPSLFLFYTFSSAVEFCFVFVSGCSIEGIMVREQRVESFYTKLRESVAASSLSPLLIFPSTSDVDSLCALKIIFQVLESDSVRYACYPVSSFQEIHKYAGPSLTSSSSDPISILLINWGCHRDLRKVLSLGPAARVFVVDSHRPIHLHNLSDQNEQVVVLYTKDDELQADLAYDFDVSALASASDLNSDDEIDEESDSDDDNDSESDNEERRGSRKRRRVEKENEDDPVQIFRKLKRGYYQMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTEERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPDASRITYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNIEVKRKMKDEFERYLPEYGLTDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGTSASKQFGVAYDALSLGNLDKLKEGMQQAIKVQRSILRQGSSAITKSGCIRSGRKFRWVKLEDSIDTKLLGYPQALTKFCYFIMDALREKGARMKPLLCACISQEPNKVLIVGVCGKPRLGASQGNAFGRAFRNAAEEIGGEFFHEMFESSWILLEKTSVNSFMVRLTQKL | 833 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8622062 | 8627093 | + | CmaCh17G012710.1 | Cma17g01271 | 313166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g01271 | 833 | PANTHER | - | 241 | 833 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 93 | 107 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 397 | 436 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 179 | 207 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 71 | 87 | - | - | |
| Cma17g01271 | 833 | Pfam | Cleavage site for pathogenic type III effector avirulence factor Avr | 149 | 181 | IPR008700 | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 108 | 122 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 418 | 436 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 27 | 161 | - | - | |
| Cma17g01271 | 833 | MobiDBLite | consensus disorder prediction | 398 | 417 | - | - | |
| Cma17g01271 | 833 | Pfam | CDC45-like protein | 661 | 832 | IPR003874 | GO:0006270 | |
| Cma17g01271 | 833 | Pfam | CDC45-like protein | 267 | 656 | IPR003874 | GO:0006270 | |
| Cma17g01271 | 833 | PANTHER | CDC45-RELATED PROTEIN | 241 | 833 | IPR003874 | GO:0006270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01238 | Cma-Chr6:8254705 | Cma17g01271 | Cma-Chr17:8622062 | 3.26E-07 | dispersed | |
| Cma17g01271 | Cma-Chr17:8622062 | Cma20g00689 | Cma-Chr20:3152742 | 1.48E-08 | dispersed | |
| Cma18g00585 | Cma-Chr18:4049110 | Cma17g01271 | Cma-Chr17:8622062 | 3.03E-18 | transposed | |
| Cma17g01271 | Cma-Chr17:8622062 | Cma08g00225 | Cma-Chr8:1262409 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g01271 | K06628 | - | csv:101221761 | 1074.69 |