Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g01290 | ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATTCCTCAATCTCTCATGCATTTCGATTCCAATCCTTCCTTGGCGACCTGGCACCACCAGTTTTCGTCGTCTGCCATGGATGTTCCTCCTCAACCTCATCTTCCAGACCTTACTCACTGTTCTTCCTCTCACCAATCGCCACCGGATTGTTTTCTCAGTTCAATTCCTGATCAGAGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCAGCGGCCTCGAATTCCAACCTAACTAATGAAAGCTTCGTGATCAGACAACTGATCGGGAAATTAGGCGGGAATTCCGAGAGAAGAATCTTGGAATTGAATTCTACTGCCGCATTAACTCCTTCTTCGAGTGTGGCGGAATTTACGTCCGATCCTGGATTGGCAGAACGAGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGACCGTCAATTGACGAACGAATTCGGTAATTACAGATCTCACCTTCCGATTGCTACCGAGAAATTAAGCCGTGTTTCGAGTAGTCCGTCGATCAAAGCCCTCGGATCTGAAACGAATTTGCTAGAACAACACAAGAACAATTCCTCATCGCATGAAGACGAATCGTCTCTCTCGAATCCGGACAAGGCGATTCCGAATCCACGGAAGAGAAAGGCAATTACAAAGGCGAAACTCAAAGAACTGATAGTTGAAGCTCCCGAAAAGGAAATTCCAAAGAAACCGAAAGCAGTGGAACCAAAGGAAAACGAAAAAGGAAACATGAAAACGGAAGAGGATTCGCCGAAAATCGATGAAAAAACAGCGGAAGAGAAGCAAACGAAGGAGAATTCCAAGCCTCCAGAACCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGGCAAGCAACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGCGAAAGAATGAAACTCCTTCAAGATCTCGTACCAGGTTGCAACAAGGTAACTGGAAAAGCCCTCATGCTGGATGAGATTATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTATCCATGAAGTTGGCTTCTGTGAATACAACCACCACCCGGGTGGATTTCAACGTGGATTCTCTCATCTCAAAACAAATGTACGAATCGGGCACCAGTTTAAGACATCCACAAATTTCCCCAATAGAATCCTCAGGTTCAAGGTTCTATGGGCACACAAATCCCTCTCTCCCAACCACTTCTCCTTGCTCTGTGGACCCTTTGGACTCTGTTTTACGCCAAAATCTTCCCATTCAACACCCTCCTCCTCTCAACTCATCCTTCCCCCAAAATCATCCCTTGCAGTATCGGAGTTTCGGGGAAGACGAGCTTCAAAGCATGGTTCAAATGGGGTTCGTCCAAAACCAGACGCAAAACTTCAACATAGGTAATCATGCAGGGTCAGAGCAAATGAAAATTGAACTATGA | 1479 | 45.17 | MENEFFLNATGIPQSLMHFDSNPSLATWHHQFSSSAMDVPPQPHLPDLTHCSSSHQSPPDCFLSSIPDQSFQFDSALSSMVSSPAASNSNLTNESFVIRQLIGKLGGNSERRILELNSTAALTPSSSVAEFTSDPGLAERAARFSCFGSRSFNDRQLTNEFGNYRSHLPIATEKLSRVSSSPSIKALGSETNLLEQHKNNSSSHEDESSLSNPDKAIPNPRKRKAITKAKLKELIVEAPEKEIPKKPKAVEPKENEKGNMKTEEDSPKIDEKTAEEKQTKENSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTTTRVDFNVDSLISKQMYESGTSLRHPQISPIESSGSRFYGHTNPSLPTTSPCSVDPLDSVLRQNLPIQHPPPLNSSFPQNHPLQYRSFGEDELQSMVQMGFVQNQTQNFNIGNHAGSEQMKIEL | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8705244 | 8707662 | + | CmaCh17G012900.1 | Cma17g01290 | 313185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g01290 | 492 | Pfam | Helix-loop-helix DNA-binding domain | 305 | 352 | IPR011598 | GO:0046983 | |
Cma17g01290 | 492 | MobiDBLite | consensus disorder prediction | 199 | 221 | - | - | |
Cma17g01290 | 492 | MobiDBLite | consensus disorder prediction | 403 | 422 | - | - | |
Cma17g01290 | 492 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 299 | 366 | IPR036638 | GO:0046983 | |
Cma17g01290 | 492 | MobiDBLite | consensus disorder prediction | 195 | 223 | - | - | |
Cma17g01290 | 492 | Gene3D | - | 298 | 372 | IPR036638 | GO:0046983 | |
Cma17g01290 | 492 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 301 | 351 | IPR011598 | GO:0046983 | |
Cma17g01290 | 492 | PANTHER | BHLH TRANSCRIPTION FACTOR | 2 | 107 | - | - | |
Cma17g01290 | 492 | PANTHER | BHLH TRANSCRIPTION FACTOR | 119 | 477 | - | - | |
Cma17g01290 | 492 | CDD | bHLH_AtBPE_like | 291 | 379 | - | - | |
Cma17g01290 | 492 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 107 | IPR024097 | GO:0006355 | |
Cma17g01290 | 492 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 119 | 477 | IPR024097 | GO:0006355 | |
Cma17g01290 | 492 | MobiDBLite | consensus disorder prediction | 238 | 292 | - | - | |
Cma17g01290 | 492 | SMART | finulus | 307 | 357 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01524 | Cma-Chr14:11539744 | Cma17g01290 | Cma-Chr17:8705244 | 1.41E-75 | dispersed | |
Cma17g01290 | Cma-Chr17:8705244 | Cma04g02184 | Cma-Chr4:15257436 | 4.33E-50 | dispersed | |
Cma18g00043 | Cma-Chr18:174590 | Cma17g01290 | Cma-Chr17:8705244 | 4.72E-37 | dispersed | |
Cma17g01290 | Cma-Chr17:8705244 | Cma08g00243 | Cma-Chr8:1373639 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36711 | PF00010 | HLH | 3.70E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g01290 | - | - | cmax:111488239 | 942.184 |