Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01290 ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATTCCTCAATCTCTCATGCATTTCGATTCCAATCCTTCCTTGGCGACCTGGCACCACCAGTTTTCGTCGTCTGCCATGGATGTTCCTCCTCAACCTCATCTTCCAGACCTTACTCACTGTTCTTCCTCTCACCAATCGCCACCGGATTGTTTTCTCAGTTCAATTCCTGATCAGAGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCAGCGGCCTCGAATTCCAACCTAACTAATGAAAGCTTCGTGATCAGACAACTGATCGGGAAATTAGGCGGGAATTCCGAGAGAAGAATCTTGGAATTGAATTCTACTGCCGCATTAACTCCTTCTTCGAGTGTGGCGGAATTTACGTCCGATCCTGGATTGGCAGAACGAGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGACCGTCAATTGACGAACGAATTCGGTAATTACAGATCTCACCTTCCGATTGCTACCGAGAAATTAAGCCGTGTTTCGAGTAGTCCGTCGATCAAAGCCCTCGGATCTGAAACGAATTTGCTAGAACAACACAAGAACAATTCCTCATCGCATGAAGACGAATCGTCTCTCTCGAATCCGGACAAGGCGATTCCGAATCCACGGAAGAGAAAGGCAATTACAAAGGCGAAACTCAAAGAACTGATAGTTGAAGCTCCCGAAAAGGAAATTCCAAAGAAACCGAAAGCAGTGGAACCAAAGGAAAACGAAAAAGGAAACATGAAAACGGAAGAGGATTCGCCGAAAATCGATGAAAAAACAGCGGAAGAGAAGCAAACGAAGGAGAATTCCAAGCCTCCAGAACCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGGCAAGCAACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGCGAAAGAATGAAACTCCTTCAAGATCTCGTACCAGGTTGCAACAAGGTAACTGGAAAAGCCCTCATGCTGGATGAGATTATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTATCCATGAAGTTGGCTTCTGTGAATACAACCACCACCCGGGTGGATTTCAACGTGGATTCTCTCATCTCAAAACAAATGTACGAATCGGGCACCAGTTTAAGACATCCACAAATTTCCCCAATAGAATCCTCAGGTTCAAGGTTCTATGGGCACACAAATCCCTCTCTCCCAACCACTTCTCCTTGCTCTGTGGACCCTTTGGACTCTGTTTTACGCCAAAATCTTCCCATTCAACACCCTCCTCCTCTCAACTCATCCTTCCCCCAAAATCATCCCTTGCAGTATCGGAGTTTCGGGGAAGACGAGCTTCAAAGCATGGTTCAAATGGGGTTCGTCCAAAACCAGACGCAAAACTTCAACATAGGTAATCATGCAGGGTCAGAGCAAATGAAAATTGAACTATGA 1479 45.17 MENEFFLNATGIPQSLMHFDSNPSLATWHHQFSSSAMDVPPQPHLPDLTHCSSSHQSPPDCFLSSIPDQSFQFDSALSSMVSSPAASNSNLTNESFVIRQLIGKLGGNSERRILELNSTAALTPSSSVAEFTSDPGLAERAARFSCFGSRSFNDRQLTNEFGNYRSHLPIATEKLSRVSSSPSIKALGSETNLLEQHKNNSSSHEDESSLSNPDKAIPNPRKRKAITKAKLKELIVEAPEKEIPKKPKAVEPKENEKGNMKTEEDSPKIDEKTAEEKQTKENSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTTTRVDFNVDSLISKQMYESGTSLRHPQISPIESSGSRFYGHTNPSLPTTSPCSVDPLDSVLRQNLPIQHPPPLNSSFPQNHPLQYRSFGEDELQSMVQMGFVQNQTQNFNIGNHAGSEQMKIEL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8705244 8707662 + CmaCh17G012900.1 Cma17g01290 313185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01290 492 Pfam Helix-loop-helix DNA-binding domain 305 352 IPR011598 GO:0046983
Cma17g01290 492 MobiDBLite consensus disorder prediction 199 221 - -
Cma17g01290 492 MobiDBLite consensus disorder prediction 403 422 - -
Cma17g01290 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 366 IPR036638 GO:0046983
Cma17g01290 492 MobiDBLite consensus disorder prediction 195 223 - -
Cma17g01290 492 Gene3D - 298 372 IPR036638 GO:0046983
Cma17g01290 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 351 IPR011598 GO:0046983
Cma17g01290 492 PANTHER BHLH TRANSCRIPTION FACTOR 2 107 - -
Cma17g01290 492 PANTHER BHLH TRANSCRIPTION FACTOR 119 477 - -
Cma17g01290 492 CDD bHLH_AtBPE_like 291 379 - -
Cma17g01290 492 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 107 IPR024097 GO:0006355
Cma17g01290 492 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 119 477 IPR024097 GO:0006355
Cma17g01290 492 MobiDBLite consensus disorder prediction 238 292 - -
Cma17g01290 492 SMART finulus 307 357 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01524 Cma-Chr14:11539744 Cma17g01290 Cma-Chr17:8705244 1.41E-75 dispersed
Cma17g01290 Cma-Chr17:8705244 Cma04g02184 Cma-Chr4:15257436 4.33E-50 dispersed
Cma18g00043 Cma-Chr18:174590 Cma17g01290 Cma-Chr17:8705244 4.72E-37 dispersed
Cma17g01290 Cma-Chr17:8705244 Cma08g00243 Cma-Chr8:1373639 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36711 PF00010 HLH 3.70E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01290 - - cmax:111488239 942.184