Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01291 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAAAGAGACAGGAACCATGACGAACTCTTGCTGGAAAAGTCCGACAACTTATCGACTTCGCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGAGCGAGGACCAGGAGTGCCCGCCAGATTTCGTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACGAATGGTATCGTTTATCTAGTCCGCACTGCCAATCGTCGGATTTCATCGCCCGATTCACCAGCTGATTCAGCCACGTCTCGGCTCTACAGGATTATCAAGGTGTTCTTGATTGTAGTGCTTCTATTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCTGCTTCTGCGGAGGTGCTTGGATTCATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGGAAATTACCTGTCTCCATCGCTGCAATGCTTGATCAATCTCTGCATTGTATTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTCTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCGTTGCGGCTTTCGAGTACTCTTCCACGGGCAAAAATGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAACGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAAAATGCTCATACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAGCTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGGATATTGTATAGACACCGCCTCATACGTACGGGCTACAAGGCAGGGAATCTCAAATCTGCCATGGGGTGCGATTACGTTAAAGATTACGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCTGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCGTTCGTGAACAAGGACGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTCGAGGTCGAGCAGCAAGTTAATGGTATGTTCATCAATTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGACTGCGGGGGCTGGTTAGAAAGAACAACGGTCGAGGACATGGATATTGCAGTCCGAGCTCATCTTTGTGGCTGGAAATTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATACGAAGCGTACAAGAAACAACAGCACCGGTGGCATTCGGGCCCGATGCAGCTATTTCGTTTGTGCTTCTTTGATGTACTCAAATCAAAGGTGAGCTGGAAGAAGAAAGCTAATTTGATTTTTCTGTTCTTCCTCTTGCGAAAGCTCATCCTTCCCTTCTATTCCTTTACCTTATTCTGCATAATTCTCCCCCTTTCCATGTTCCTTCCAGAAGCTCATCTACCAGCTTGGGTTGTTTGCTATGTGCCCGGAATCATGTCCATCTTAAATATTCTTCCTGCACCACGTTCGTTTCCGTTCTTAGTCCCCTATCTTCTATTCGAAAACACTATGTCCGTTACCAAATTCAATGCCATGATATCGGGGCTATTCCACTTTGGAAGTTCGTATGAATGGATAGTAACAAAGAAACTAGGAAGATCATCCGAAAACAATCTTGTTGCTTTGGAAAAAGAACTAGAGCCTCTAGTTGAGGGTACGAGTCTTCATCGATCTTCTTCGGAATCAGGTCTGCAGGAATTGACCAAGCTCGAGATATCGAAAAAAGTAGGGAAAAACAAACGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTCATTTTGTTGACTGCCTCAGTGAGAAGTTTGTTGTCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAGGGTATCTCTTTTCTAGTTGTGGGTCTTGATTTAATTGGAGAGCAGGTCAGTTAA 2085 44.46 MSRTPNYEFQEWWNKQRDRNHDELLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGIVYLVRTANRRISSPDSPADSATSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGFIGFLYANWLQIRGNYLSPSLQCLINLCIVLFLIQSVDRLLLMLGCFWIKFRRLKPVAAFEYSSTGKNAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLIQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFFDVLKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLSMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFHFGSSYEWIVTKKLGRSSENNLVALEKELEPLVEGTSLHRSSSESGLQELTKLEISKKVGKNKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8712558 8717318 + CmaCh17G012910.1 Cma17g01291 313186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01291 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 511 IPR029044 -
Cma17g01291 694 Pfam Glycosyl transferase family group 2 326 532 IPR001173 -
Cma17g01291 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 450 IPR029044 -
Cma17g01291 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 693 - -
Cma17g01291 694 PANTHER - 25 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00318 Cma-Chr15:1478058 Cma17g01291 Cma-Chr17:8712558 0 dispersed
Cma20g00548 Cma-Chr20:2660461 Cma17g01291 Cma-Chr17:8712558 9.38E-141 dispersed
Cma17g01291 Cma-Chr17:8712558 Cma08g00245 Cma-Chr8:1381116 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01291 - - csv:101216681 1285.01