Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01291 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAAAGAGACAGGAACCATGACGAACTCTTGCTGGAAAAGTCCGACAACTTATCGACTTCGCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGAGCGAGGACCAGGAGTGCCCGCCAGATTTCGTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACGAATGGTATCGTTTATCTAGTCCGCACTGCCAATCGTCGGATTTCATCGCCCGATTCACCAGCTGATTCAGCCACGTCTCGGCTCTACAGGATTATCAAGGTGTTCTTGATTGTAGTGCTTCTATTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCTGCTTCTGCGGAGGTGCTTGGATTCATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGGAAATTACCTGTCTCCATCGCTGCAATGCTTGATCAATCTCTGCATTGTATTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTCTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCGTTGCGGCTTTCGAGTACTCTTCCACGGGCAAAAATGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAACGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAAAATGCTCATACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAGCTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGGATATTGTATAGACACCGCCTCATACGTACGGGCTACAAGGCAGGGAATCTCAAATCTGCCATGGGGTGCGATTACGTTAAAGATTACGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCTGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCGTTCGTGAACAAGGACGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTCGAGGTCGAGCAGCAAGTTAATGGTATGTTCATCAATTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGACTGCGGGGGCTGGTTAGAAAGAACAACGGTCGAGGACATGGATATTGCAGTCCGAGCTCATCTTTGTGGCTGGAAATTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATACGAAGCGTACAAGAAACAACAGCACCGGTGGCATTCGGGCCCGATGCAGCTATTTCGTTTGTGCTTCTTTGATGTACTCAAATCAAAGGTGAGCTGGAAGAAGAAAGCTAATTTGATTTTTCTGTTCTTCCTCTTGCGAAAGCTCATCCTTCCCTTCTATTCCTTTACCTTATTCTGCATAATTCTCCCCCTTTCCATGTTCCTTCCAGAAGCTCATCTACCAGCTTGGGTTGTTTGCTATGTGCCCGGAATCATGTCCATCTTAAATATTCTTCCTGCACCACGTTCGTTTCCGTTCTTAGTCCCCTATCTTCTATTCGAAAACACTATGTCCGTTACCAAATTCAATGCCATGATATCGGGGCTATTCCACTTTGGAAGTTCGTATGAATGGATAGTAACAAAGAAACTAGGAAGATCATCCGAAAACAATCTTGTTGCTTTGGAAAAAGAACTAGAGCCTCTAGTTGAGGGTACGAGTCTTCATCGATCTTCTTCGGAATCAGGTCTGCAGGAATTGACCAAGCTCGAGATATCGAAAAAAGTAGGGAAAAACAAACGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTCATTTTGTTGACTGCCTCAGTGAGAAGTTTGTTGTCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAGGGTATCTCTTTTCTAGTTGTGGGTCTTGATTTAATTGGAGAGCAGGTCAGTTAA 2085 44.46 MSRTPNYEFQEWWNKQRDRNHDELLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGIVYLVRTANRRISSPDSPADSATSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGFIGFLYANWLQIRGNYLSPSLQCLINLCIVLFLIQSVDRLLLMLGCFWIKFRRLKPVAAFEYSSTGKNAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLIQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFFDVLKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLSMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFHFGSSYEWIVTKKLGRSSENNLVALEKELEPLVEGTSLHRSSSESGLQELTKLEISKKVGKNKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8712558 8717318 + CmaCh17G012910.1 Cma17g01291 313186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01291 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 511 IPR029044 -
Cma17g01291 694 Pfam Glycosyl transferase family group 2 326 532 IPR001173 -
Cma17g01291 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 450 IPR029044 -
Cma17g01291 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 693 - -
Cma17g01291 694 PANTHER - 25 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01291 - - - csv:101216681 1285.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00318 Cma-Chr15:1478058 Cma17g01291 Cma-Chr17:8712558 0 dispersed
Cma20g00548 Cma-Chr20:2660461 Cma17g01291 Cma-Chr17:8712558 9.38E-141 dispersed
Cma17g01291 Cma-Chr17:8712558 Cma08g00245 Cma-Chr8:1381116 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g01291 Cma_Chr17 FPKM 12.692471 14.433547 11.144229 11.419201 12.15304 8.915939 11.728174 3.687393 2.978384 3.893697