Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01292 ATGGATGAGGATTTTGATATCCCTGCTGCGCCTGACATGAACGACGACTTCGATCTTCCTGATGAACCCGCTGCGCTTAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTATACTGGGACTTTGCTGGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGTACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGTTGGGATCTGGGTATTAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTCACCATTCCTCCAGAACTGGCATATGGTGAATCTGGCTCCCCACCGACCATCCCGCCTAGTGCGACATTGCAGTTCGACGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACGCTTGTTGCCAAAGCTGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGTCCTGCTGTTGCGAGGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCGCTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAACCAGCCTCGAGTAATGAAGGTGCAGTTCCACCGAATGCATCGCTCAATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTAAAAGAAGGAGAAGGGTATGAGAAGCCAAATGATGGAGCCATTGTGAAAGTAAAATTGACTGGGAAGTTGGGAGATGGCAATGTATTCTTGAGGAAGGGATATGATGATGGCGAAGAGCCATTCGAGTTTAAAACCGACGAGGAACAAGTGATCGATGGCCTCGACAAAGCCGTGGCGACAATGAAGAAAGGAGAGATAGCCCTGGTGACAATAGCACAAGAGTATGCTTTTGGATCGTCCGAGTCACAACAGGAACTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAGGTCGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCTGGAAAATTTGCTAGAGCTTCAAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCGTTTAGCGAAGACGAGAAAAAGCAGGCGAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCTATACAACGAGGCAGAGAAATTGTGTACCAAGGTGCTGGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCGTATATCGAACTAGCGGATTTCGATTTGGCTGAATTTGACATCAAGAAGGCTCTCGATATTGATCCGAATAACAGGGATGTGAAATTGGAGTACAAAACACTGAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAAGAATTAG 1650 44.0 MDEDFDIPAAPDMNDDFDLPDEPAALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPAVARAVKTMKIGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLNITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLTGKLGDGNVFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALVTIAQEYAFGSSESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEDEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIELADFDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8717436 8721648 - CmaCh17G012920.1 Cma17g01292 313187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01292 549 SUPERFAMILY FKBP-like 148 264 - -
Cma17g01292 549 PANTHER PEPTIDYLPROLYL ISOMERASE 381 548 - -
Cma17g01292 549 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Cma17g01292 549 PANTHER PEPTIDYLPROLYL ISOMERASE 271 380 - -
Cma17g01292 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 257 IPR001179 GO:0003755
Cma17g01292 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Cma17g01292 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cma17g01292 549 MobiDBLite consensus disorder prediction 1 20 - -
Cma17g01292 549 Gene3D - 31 147 IPR046357 GO:0003755
Cma17g01292 549 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Cma17g01292 549 SUPERFAMILY FKBP-like 264 399 - -
Cma17g01292 549 Gene3D - 262 383 IPR046357 GO:0003755
Cma17g01292 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cma17g01292 549 SUPERFAMILY FKBP-like 33 148 - -
Cma17g01292 549 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Cma17g01292 549 SMART tpr_5 399 432 IPR019734 GO:0005515
Cma17g01292 549 SMART tpr_5 482 515 IPR019734 GO:0005515
Cma17g01292 549 SMART tpr_5 448 481 IPR019734 GO:0005515
Cma17g01292 549 MobiDBLite consensus disorder prediction 1 19 - -
Cma17g01292 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Cma17g01292 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 548 - -
Cma17g01292 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 271 380 - -
Cma17g01292 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Cma17g01292 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Cma17g01292 549 Coils Coil 515 535 - -
Cma17g01292 549 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Cma17g01292 549 Gene3D - 148 261 IPR046357 GO:0003755
Cma17g01292 549 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01196 Cma-Chr2:7070460 Cma17g01292 Cma-Chr17:8717436 4.02E-16 dispersed
Cma17g01292 Cma-Chr17:8717436 Cma19g00474 Cma-Chr19:5678432 3.08E-11 dispersed
Cma17g01292 Cma-Chr17:8717436 Cma17g01293 Cma-Chr17:8722251 9.30E-25 tandem
Cma01g00232 Cma-Chr1:1070234 Cma17g01292 Cma-Chr17:8717436 2.44E-09 transposed
Cma07g01025 Cma-Chr7:5343053 Cma17g01292 Cma-Chr17:8717436 2.71E-19 transposed
Cma14g01527 Cma-Chr14:11556106 Cma17g01292 Cma-Chr17:8717436 0 transposed
Cma15g00097 Cma-Chr15:460416 Cma17g01292 Cma-Chr17:8717436 1.83E-10 transposed
Cma20g00275 Cma-Chr20:1338689 Cma17g01292 Cma-Chr17:8717436 2.38E-10 transposed
Cma17g01292 Cma-Chr17:8717436 Cma08g00246 Cma-Chr8:1389187 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01292 K09571 - csv:101214513 992.645