Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01318 ATGCGCGGCGGCGATAAGAAGTCCTGTCTCAAATTTGCCGTCATGGCGGTGCTTCTACTAGTGGTTGCGATCGAGGACGCCGGAATCGCCACGGTGACGGCGAGGCCGATTCGAAACTCCAGCGTTGAGGCACTCCGCCCGCAGTATAGAGCGCCGGTTCCGCCGTCTGGCCGGAATCCTTGCTCTCACTTTAAATCATACGCTCATGTTCGCGTAGCTACGTTTCGGACATTCATATTGGGAGTCGGAATGGACAATCCTGTGAATATCGTTGTTGGTTCTCACATATGGGTGGGAGATATAGAGTCTGTTTGGATTGATGGACTAGTATTGAACATCATTGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCAAATCTGTATCCAAGGGATGCAGAAGCTCCTGCTACTGGAATTGACGATATGACTAGAATGTCATATTTGAATGAGCCTGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAATCTGTATGATCCGTGTGTGATGGAGCAGTACAAGGGAGCACCAGTCGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTCGCATATAGGGCTATGATAACTTATGGGAAAAGCAACTCCATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCAAGGCTGCATCTGAAGGACGGTCTGTTCAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTTAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGAGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTACCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGGTATAAGCTGGGAAATCCGAAATCATTTCACTATCTAAATCAATCAAATTGTTATGAGCTGGCTGGTGTGAATGATGCTCATGATTATCTTGCCACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCCGAGTTGTGGCTGCAATACTCCATCTTGGTAATGTTGACTTTGCAAAAGGAGAGGAGTCTGATTCATCATTTATAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCAATGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACGGGAGGAAATCATCAAGAGAAGTCTTGATCCGCTTGGTGCAACTGTTAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTAGGTAAAATCAATGTTTCCATCGGGCAAGATCATGGCTCGGAATATCTGATTGGAGTACTTGATATTTATGGTTTTGAAAGCTTTAAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTCAAAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGATCTAATTGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTCCCAAAATCAAATCATGAAACATTTTCACAAAAGCTATATCAGACTTTCAAAAATCATAAACGCTTCACCAAGCCAAAATTGGCTCGCTCAGATTTTACGATTGTTCATTATGCTGGAGATGTACTATACCAGTCAGATCATTTTCTAGACAAAAATAAAGATTATGTGGTCGCTGAACATCAAGATTTGTTAATTGCTTCAAAATGTTCTTTTGTATCTGGCCTTTTCCCTCCTCCTGAGGAGGCGACCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACATTAAATTCGACCGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTACAACCTGCCATATTTGAGAATGCTACTGTTATGCAACAATTACGTCATGGAGGTGTTTTGGAGGCTGTTAGAATTAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTACGAAGAGATGGTAGCATGCAGGAAGATTCTAGAGAAGACAGGGCTTGAAGGTTATCTGATAGGGAAATCAAAACTTTTCCTAAGAGGTAGTCTGATGGCCGAACTAGATGCACAAAGAACAAGAGTATATAGTGCAGCTGCCACAGTTATACAGAAGCATATCAAATCTCGAATTGAACGTAAAAAGTACATTCGTATGCGAAGAAGTTGCACTTGTCTACAGTCATATTGGAGAGGTGTTCTTGCTCGAGAGTCATATGAAAGTAAGAGAAGAGAATCAGCTGCCCTCAAAATTCAAAGGAATAGTCTTGCATATATTGCCAGGAGCATCCATATTAAAACAAGGCTCGCTGTAGTTGTTCTTCAGGCTGGTATACGAGCAATGGTTGCTCGGAGTGAATACAGATGTAGGAGGCAGGTTAACACTGCTGCAATAGTTATTCAATCTCATTGGCGTCAGTATTTGAAGTCTAAGATGGTTAGAAATCCATCAACCGGTTCACAATGCGGATTGAACTCAAGAACTGCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCTGACTCGGAAGAAACAGAGGAGGGTCTTACCTTGCCTGCGTTGCTCAACAGCGGGACAGATGCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAACCGTGTTTCTCCAAAAGAAATAGAAGAAGCATACTTTATTATTAAAGAGCCCGGTAGTTCAGTTGAAGAAGCAGAAACTATGGTCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCATGTTGCAGGCTGAAAGACAAAGAGCTAATGAGTATGAAAGGAAGTATATTGCAACGCTGAAAGTAAATGCAGAAGGATGTAGAAGACTAAAAGAAAACGAGAGGATGGTGCGTCAACTTCAGGACTGCATAAGCAGGATGATACATGGCATGTCAAACCAAATCACGGAGATGAAAATGATCATGTGTACTCCTCCTAGGCCAGATGCATCTAGTTCTATTCCAAACAGGGTTCCGACGGATGCCACATCTAGTTGCTCTTATTCATCGTCAGAAGACTTCACCTTTCCTGTTCCAAGTTCGTCCATGCCAACTTTCTCTTCATTTGGATCTAACAATGACAGGGAAGGGGGATTCTCTGACTACTTCTAA 3468 41.7 MRGGDKKSCLKFAVMAVLLLVVAIEDAGIATVTARPIRNSSVEALRPQYRAPVPPSGRNPCSHFKSYAHVRVATFRTFILGVGMDNPVNIVVGSHIWVGDIESVWIDGLVLNIIGEDAEIQTSDGRQVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISNLYDPCVMEQYKGAPVGELKPHVFAIADVAYRAMITYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGKAASEGRSVQQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNVDFAKGEESDSSFIKDEESKFHLHMTAELLMCDPNALEDALCKRMMITREEIIKRSLDPLGATVSRDGLAKTIYSRLFDWLVGKINVSIGQDHGSEYLIGVLDIYGFESFKTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSNHETFSQKLYQTFKNHKRFTKPKLARSDFTIVHYAGDVLYQSDHFLDKNKDYVVAEHQDLLIASKCSFVSGLFPPPEEATKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRHGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEMVACRKILEKTGLEGYLIGKSKLFLRGSLMAELDAQRTRVYSAAATVIQKHIKSRIERKKYIRMRRSCTCLQSYWRGVLARESYESKRRESAALKIQRNSLAYIARSIHIKTRLAVVVLQAGIRAMVARSEYRCRRQVNTAAIVIQSHWRQYLKSKMVRNPSTGSQCGLNSRTAGEGLKKQRMADSEETEEGLTLPALLNSGTDAIDETIEMIAKENRVSPKEIEEAYFIIKEPGSSVEEAETMVTLRAEVANLKAMLQAERQRANEYERKYIATLKVNAEGCRRLKENERMVRQLQDCISRMIHGMSNQITEMKMIMCTPPRPDASSSIPNRVPTDATSSCSYSSSEDFTFPVPSSSMPTFSSFGSNNDREGGFSDYF 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8881699 8902496 + CmaCh17G013180.1 Cma17g01318 313213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01318 1155 ProSiteProfiles IQ motif profile. 817 843 IPR000048 GO:0005515
Cma17g01318 1155 Pfam Myosin head (motor domain) 148 802 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 PANTHER MYOSIN 88 1104 - -
Cma17g01318 1155 SMART iq_5 816 838 IPR000048 GO:0005515
Cma17g01318 1155 SMART iq_5 864 886 IPR000048 GO:0005515
Cma17g01318 1155 SMART iq_5 913 935 IPR000048 GO:0005515
Cma17g01318 1155 SMART iq_5 839 861 IPR000048 GO:0005515
Cma17g01318 1155 SMART iq_5 887 909 IPR000048 GO:0005515
Cma17g01318 1155 Pfam IQ calmodulin-binding motif 819 837 IPR000048 GO:0005515
Cma17g01318 1155 Pfam IQ calmodulin-binding motif 917 929 IPR000048 GO:0005515
Cma17g01318 1155 Pfam IQ calmodulin-binding motif 891 909 IPR000048 GO:0005515
Cma17g01318 1155 Pfam IQ calmodulin-binding motif 841 860 IPR000048 GO:0005515
Cma17g01318 1155 Gene3D - 335 393 - -
Cma17g01318 1155 Gene3D Kinesin motor domain 148 744 IPR036961 -
Cma17g01318 1155 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 88 1104 - -
Cma17g01318 1155 ProSiteProfiles IQ motif profile. 888 917 IPR000048 GO:0005515
Cma17g01318 1155 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 91 140 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 Gene3D - 887 937 - -
Cma17g01318 1155 Gene3D - 817 869 - -
Cma17g01318 1155 PRINTS Myosin heavy chain signature 175 194 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 PRINTS Myosin heavy chain signature 232 257 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 PRINTS Myosin heavy chain signature 512 540 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 PRINTS Myosin heavy chain signature 279 306 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 PRINTS Myosin heavy chain signature 565 593 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 934 IPR027417 -
Cma17g01318 1155 ProSiteProfiles Myosin motor domain profile. 145 814 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 Coils Coil 1020 1047 - -
Cma17g01318 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 864 IPR027417 -
Cma17g01318 1155 MobiDBLite consensus disorder prediction 1135 1155 - -
Cma17g01318 1155 SMART MYSc_2a 139 815 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01318 1155 MobiDBLite consensus disorder prediction 936 967 - -
Cma17g01318 1155 Gene3D - 748 815 - -
Cma17g01318 1155 ProSiteProfiles IQ motif profile. 840 869 IPR000048 GO:0005515
Cma17g01318 1155 Gene3D - 522 705 - -
Cma17g01318 1155 Gene3D Myosin VI head, motor domain, U50 subdomain 395 683 - -
Cma17g01318 1155 CDD MYSc_Myo11 159 802 IPR036018 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01318 Cma-Chr17:8881699 Cma11g00715 Cma-Chr11:3486196 0 dispersed
Cma17g01318 Cma-Chr17:8881699 Cma08g00269 Cma-Chr8:1546335 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01318 K10357 - csv:101220626 1791.55