Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01322 ATGGATTCGGCGAGGAGTTGGTTCAATAAGCTTCAGCCGAGAGATAGGCCGAGAGGTTCTTCGAAGAAGAAGGACGATAGTATGGAAGGGAACGAGGATTGTACTGATAAAATGGATGGAGAAGCGCATTCGAATAGCACTAAGCAGAAGGCTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAAGATCAAAACAATTTACTCAAGTATTTAGAGAAGAAGGAAACTGAATATATGCGCCTCAAAAGGCACAAAATGGGTGTCAGTGATTTTGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTATGTAGAGAGAAGACTTCAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATCGTGAAACTCTATTGTTCTTTTCAAGATGACGAGTTTCTTTATCTTATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGATGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTGTTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCGGACTTTGGACTGTGCAAACCATTAGATTGCAGTACACTCAAAGAACAAGATCTTGATATAGGGAGTGTCCGTAATGAAGCTGGACAGAGTGATGAGCGTAATGCAGCTCCCCGTACTCAACAAGAGCAACTCCAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCGGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGGTGTTCCCTGATGAAGCAAAGCTATCTCCCTTGGCAAAAGATCTTATCAGCAAACTACTATGCAATGTTGACGAGAGGCTAGGGACAAATGGCGCGGATGACATTAAGGTTCATCCGTGGTTTGAAGGTATTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACTTGCAAAGCAGTTCTTCATCTAAATCTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATATACTTACAAAAACTTCGAAATTGTCAATGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAAAAAAGCGGCAAACAAAAAAGACCGACAATCAAGTCAATCTTTGATGGCGAAGAGGCAACAGATGCATCTGATACATCTAATTATGGTCAGTCCAGAGAAGGTAGCTTTTCAAACTCAATGACATCTCAACAGGATGAAGTTGAAGCAAGGAAACAGTCGATGTAA 1665 40.72 MDSARSWFNKLQPRDRPRGSSKKKDDSMEGNEDCTDKMDGEAHSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKYLEKKETEYMRLKRHKMGVSDFDLLTIIGKGAFGEVRVCREKTSGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAVESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLKEQDLDIGSVRNEAGQSDERNAAPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLVFPDEAKLSPLAKDLISKLLCNVDERLGTNGADDIKVHPWFEGIEWDRLYEMEAAFVPEVKDELDTQNFEKFEECDLQSSSSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSGKQKRPTIKSIFDGEEATDASDTSNYGQSREGSFSNSMTSQQDEVEARKQSM 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8912799 8920114 - CmaCh17G013220.1 Cma17g01322 313217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01322 554 MobiDBLite consensus disorder prediction 500 554 - -
Cma17g01322 554 MobiDBLite consensus disorder prediction 9 44 - -
Cma17g01322 554 Coils Coil 62 82 - -
Cma17g01322 554 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma17g01322 554 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma17g01322 554 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma17g01322 554 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Cma17g01322 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 522 - -
Cma17g01322 554 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Cma17g01322 554 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cma17g01322 554 MobiDBLite consensus disorder prediction 519 554 - -
Cma17g01322 554 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g01322 554 Pfam Protein kinase domain 122 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g01322 554 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Cma17g01322 554 MobiDBLite consensus disorder prediction 500 518 - -
Cma17g01322 554 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 522 - -
Cma17g01322 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cma17g01322 554 MobiDBLite consensus disorder prediction 1 54 - -
Cma17g01322 554 CDD STKc_NDR_like 118 482 - -
Cma17g01322 554 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01079 Cma-Chr8:6729107 Cma17g01322 Cma-Chr17:8912799 0 dispersed
Cma17g00158 Cma-Chr17:800797 Cma17g01322 Cma-Chr17:8912799 0 dispersed
Cma17g01322 Cma-Chr17:8912799 Cma08g00274 Cma-Chr8:1598140 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69256 PF00069 Pkinase 7.50E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01322 K08790 - csv:101221720 979.548