Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01361 ATGTTCGATTTAGATAAGTTGCTTGATGACTTCAATTCATTTTCTATACCTCAAACTCGCCAAGAACTTGGTCAATTTCTTCATTTACTCAATTGGGTTGCTCTTTTTCAACGCATTCGAGGTGGATCCATAAGCATCCCTCAAGATTTTGATCAGATCAGAGTCTTTTATAGAATGGCTTCTACTACCGGTCTTGTTGGAGTTGGATCGCTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGTGAAGTGTTAGAAGTTCGTGGCGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGCAGTTAAAGCAGCTAATGTCTACCCGAAAGATTCCGAAGTGCCACCTTGTGGTGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCCGGGGTGCTACACAATTTAAAATTGAGATATGATATTAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTAAACCCTTTTACGAGGTTACCCCATCTGTATGATAGCTATATGATGGCACAATATAAAGGGGCCGGATTCGGTGAGCTGAGTCCACACCCATTTGCAATTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATTTTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACAAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTGCCGAGGGGAGGTCGGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCAAAAACTGTTCGGAACAACAACTCAAGTCGTTTCGGTAAGTTTGTGGAGATCCAATTTGACCAAGGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTCGAAAGATCTCGTGTTTGTCAGGTGTCCGATCCAGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGGACCACCTGAGGATGTCAAGAAGTATAAATTGGAAAACCCAAGAAGTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGAAATTAATGATGCCAAAGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGGATAAGTTCGGACGAGCAGGATGGAATATTTCGTGTTGTAGCTGCGATTCTTCATCTAGGAAACATTGAATTCGCAAAAGGGAAGGAGGCCGATTCTTCCATTCCGAAAGATGAAAAATCTTGGTTCCATCTAAGAACCGCTGCGGAGCTTTTCATGTGTGACGAAAAGGCTCTAGAAGACTCTCTTTGCAAACGTGTAATCGTCACTCGTGATGAGAATATCACAAAGTGGCTGGATCCAACTGCTGCAGCCCTTAGCAGAGATGCTTTGGCAAAAATTGTATACTCAAGATTGTTTGACTGGCTGGTAGACAAAATTAATAATTCAATTGGACAGGATCCCGATTCGAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGACATCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACGTTCAAAAACCATAAACGCTTCAGCAAACCAAAATTATCCCGGAGTGACTTCACGATTGCTCATTATGCTGGTGATGTCACCTATCAAACTGATTTATTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACACCAAGCGCTCTTGAGCGCTTCCAAATGCTTCTTTGTGTCACGTTTGTTTCCTCAATTAGCTGAAGAATCATCCAAATCTTCGAAATTCTCATCAATAGGTTCCCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACTCTAAGTGCTACCGAGCCGCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTTCTATCTTCGAGAATAAGAATATATTGCAACAACTACGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCCGGTTTTCCAACGAGGAAAACATTTGACGAATTTGTTGACCGATTCGGACTCCTTGCTCCTGAAGTTTTGGATGGGAGCTCTGATGAAGTGACTGCTTGCAAGAGGCTTCTAGAAAAGGTCGGACTTAAAGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTCGATGCACTCAGGACTGAGATCTTAGGGAGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTGGCTCGTAGAAGTTTTGTATCGCTTCGGAGGTCAGCTATACATCTGCAGTCTGCATGTAGAGGACAACTCGCTCGACAAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTTTAATGATTCAAAGGAATTTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCGTCAGTCGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTGCGCTTCAGACGGCGATCTAAAGCAGCAATTGTTATCCAGAGCTATTGTCGACGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCCATATGGCGAGGACGAGTTGCTCGTAAGGAACTACGGAAGCTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGTTGGAGAAGCGTATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCGAAAAAGGCGGCGGATATTGTTCCGATTGTGAAAGAGGTTCCAGTTCTTGATAATGCAGCGATTGAGAAAATTTCGAGTGAAAATGAAAAGCTCAAGGCTTTGGTAAGTTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAGTACGAAGAGGCGAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGACACTGAAACAAAAATTATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAACCAGCTTCTTCGGCAGCAGACCTTCATGAAGACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGAAATTGGAGAACGGTAACCATTTGATTGAAGAAAACAGAACTGATGAGCAGTTTGTAACGCCCGTGAAATCACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCACATTTTGAACATCAACAAGAGAATGTTGATGCTCTTATCAGTTGTGTTATGAACAACACTGGGTTTAGTAATGGGAAGCCTATAGCTGCATTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTTGAAGCGGAAAAAACAAGCGTATTTGATCGACTAATTCAGATGATCGGATCCGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCAAACACGTCTGCGCTACTATTCTTGCTTCAACGAAGCTTGAAAGCTGCCGGCGCTCCCCGAAAACCGCCACCGTCAACGTCCATATTTGGAAGGATGACTATGGGCTTCCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCACTTAAGGTAGTTCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACAGCGTATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACAACATTGCTTTCGTCGTGTATCCAAGCACCAAGAACATCGAAAGGAGTGTTACGATCGGGACGATCATTTGGGAAAGATACTCAAACAAATTACTGGCTGAGCATCATAGAACACCTTAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCGCAAATTCTTATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTCCGACGAGAATGTTGTACGTTTAGCAATGGGGAATACGTTAAGTCCGGGTTAGCCGAGTTGGAGCTCTGGTGTTGCCAGGCAAAAGAAGAGTATGCTGGTGCTTCTTGGGACGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAGCTTTATAGAATATGTACGCTCTACTGGGACGACAACTACAACACTCGAAGCGTATCGCCCGGAGTAATATCCAGCATGAGAGTGCTCATGACAGAGGATTCCAACAATGCAGTTAGCAGTTCCTTCCTATTAGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTCTCGAACTCGCTGCAAGAGAAAGATTTCTCCGGCGTGAAGCCTGCCGACGAACTACTCGAGAACCCCGCCTTCCAATTTTTACACGAGTAA 4704 41.82 MFDLDKLLDDFNSFSIPQTRQELGQFLHLLNWVALFQRIRGGSISIPQDFDQIRVFYRMASTTGLVGVGSLVWLEDSEEAWIEGEVLEVRGEEIKVLCTSGKTVAVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTRLPHLYDSYMMAQYKGAGFGELSPHPFAIADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQGGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAGPPEDVKKYKLENPRSFHYLNQSNCYELDEINDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSIPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDENITKWLDPTAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCFFVSRLFPQLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPSIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVSLRRSAIHLQSACRGQLARQVFEGMRREASSLMIQRNLRMHLCRKAYKEKYSSVVSIQTGMRGMAARNELRFRRRSKAAIVIQSYCRRYLAQLHYKKLKKAAITTQSIWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQLQLKETKAMFEKEREAAKKAADIVPIVKEVPVLDNAAIEKISSENEKLKALVSSLEKKIDETEKKYEEANRVSEERLKQASDTETKIIQLKTAMQRLEEKFSNIESENQLLRQQTFMKTPVKKMADHLPIAAAEKLENGNHLIEENRTDEQFVTPVKSLKRISSESEIKLSRSHFEHQQENVDALISCVMNNTGFSNGKPIAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPPSTSIFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTTLLSSCIQAPRTSKGVLRSGRSFGKDTQTNYWLSIIEHLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPGVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE 1567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9101620 9117483 - CmaCh17G013610.1 Cma17g01361 313256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01361 1567 ProSiteProfiles Dilute domain profile. 1218 1513 IPR002710 -
Cma17g01361 1567 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 67 116 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 Pfam Myosin N-terminal SH3-like domain 69 110 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 817 846 IPR000048 GO:0005515
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
Cma17g01361 1567 PANTHER MYOSIN 48 1565 - -
Cma17g01361 1567 CDD MyosinXI_CBD 1169 1536 IPR037975 GO:0007015
Cma17g01361 1567 Gene3D - 498 682 - -
Cma17g01361 1567 CDD MYSc_Myo11 135 779 IPR036018 -
Cma17g01361 1567 ProSiteProfiles Myosin motor domain profile. 121 791 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 SMART DIL_2 1388 1495 IPR002710 -
Cma17g01361 1567 PRINTS Myosin heavy chain signature 208 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 PRINTS Myosin heavy chain signature 151 170 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 PRINTS Myosin heavy chain signature 255 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 PRINTS Myosin heavy chain signature 541 569 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 PRINTS Myosin heavy chain signature 488 516 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 Gene3D Myosin VI head, motor domain, U50 subdomain 371 660 - -
Cma17g01361 1567 Gene3D - 844 891 - -
Cma17g01361 1567 Gene3D - 892 941 - -
Cma17g01361 1567 Gene3D - 794 843 - -
Cma17g01361 1567 Coils Coil 1031 1107 - -
Cma17g01361 1567 Coils Coil 936 1009 - -
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 865 894 IPR000048 GO:0005515
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 890 919 IPR000048 GO:0005515
Cma17g01361 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 942 IPR027417 -
Cma17g01361 1567 Gene3D - 726 790 - -
Cma17g01361 1567 Gene3D Kinesin motor domain 124 721 IPR036961 -
Cma17g01361 1567 Gene3D - 311 369 - -
Cma17g01361 1567 SMART iq_5 912 934 IPR000048 GO:0005515
Cma17g01361 1567 SMART iq_5 889 911 IPR000048 GO:0005515
Cma17g01361 1567 SMART iq_5 841 863 IPR000048 GO:0005515
Cma17g01361 1567 SMART iq_5 816 838 IPR000048 GO:0005515
Cma17g01361 1567 SMART iq_5 793 815 IPR000048 GO:0005515
Cma17g01361 1567 SMART iq_5 864 886 IPR000048 GO:0005515
Cma17g01361 1567 Pfam IQ calmodulin-binding motif 818 837 IPR000048 GO:0005515
Cma17g01361 1567 Pfam IQ calmodulin-binding motif 796 814 IPR000048 GO:0005515
Cma17g01361 1567 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Cma17g01361 1567 Pfam IQ calmodulin-binding motif 845 863 IPR000048 GO:0005515
Cma17g01361 1567 Pfam IQ calmodulin-binding motif 892 911 IPR000048 GO:0005515
Cma17g01361 1567 Pfam DIL domain 1389 1492 IPR002710 -
Cma17g01361 1567 Pfam Myosin head (motor domain) 123 779 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 842 871 IPR000048 GO:0005515
Cma17g01361 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 844 IPR027417 -
Cma17g01361 1567 SMART MYSc_2a 116 792 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma17g01361 1567 PANTHER MYOSIN-14 48 1565 - -
Cma17g01361 1567 ProSiteProfiles IQ motif profile. 796 820 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00051 Cma17g01361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01282 Cma-Chr6:8516480 Cma17g01361 Cma-Chr17:9101620 0 dispersed
Cma17g00917 Cma-Chr17:6904312 Cma17g01361 Cma-Chr17:9101620 0 dispersed
Cma17g01361 Cma-Chr17:9101620 Cma08g00051 Cma-Chr8:276033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01361 K10357 - csv:101208630 2829.66