Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01379 ATGGCCGGTTTGGTCACCGGTTCCCAACACTATCCCCACGTAGCCAATGAGAGTCACCGTGGACCTGCATCATCGATGAAAACGTGTAGAGTTTGTGGTGACGAAATTGGACTCAAAGATGATGGGAAAGTATTTGTGGCATGTTTGGTGTGTAATTTCCCTGTTTGTCGTCCTTGTTATGAGTACGAAAGGAGCGAAGGCAACAAGTGTTGTCCTCAATGCAACACTCGCTACAAGCGTCATAAAGGCTCGCCTAGAGTCATTGGTGACGACGAAGAAGCTGACGATGCAGACGATTTCGACGATGAATTCCCCATCAAACACCACAGTAATGATGAGTTCGAATCAAAACAGCCCAATCCTTCGGAACACGATAACTACAACCAGAAGAATTGGCATCAAAACGTCCATAGTTCCTTCTCAGTTGCAGGCAGTGTGAATGGGAAGGAGATGGAAGGCGAGAAGGACAGTTATGGAAATGCTGAATGGAAGGAGAGAATAGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGGAACAAAGATGATGAAAGTAACCATGATCAACCCCTAGAAGATGACTTCTTATTGGCAGAAGCCCGGCAACCACTATGGCGGAAGGTTCCAATATCGTCGAGCAAAATCAGTCCATATCGGATAGTCATAGTCCTCCGCCTCGTAATTCTTGCATTCTTCTTCCGCTTTCGGATCTTAACTCCGGCCTACGACGCCTTCCCCTTGTGGCTCATCTCTGTCATATGCGAAATCTGGTTCGGCTTCTCCTGGATTCTGGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTGGACCGGCTGTCCATGCGGTTCGAGCGGGATGGGGAGCCCAACCGCCTGGCTCCGATCGACTTCTTCGTCAGCTCGGTGGACCCTCTCAAGGAGCCGCCCATCATAACCGCCAACACGGTGCTGTCCATCCTGGCGGTGGACTATCCGGTGGACAAGGTGAGCTGCTACGTGTCGGATGACGGAGCGTCCATGTTGTTGTTTGACGCGCTGGCGGAGACAGCGGAGTTTGCTCGGAGATGGGTTCCGTTCTGCAAGAAGTTCAGCGTCGAGCCTAGGGCTCCGGAGTTCTACTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGCCCAGTTTCGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCTAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGATGTGGATGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAGCGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCTATGAATGCTCTGGTTCGAGTCTCTGCAGTCCTCACTAATGCACCATTCATCTTAAATCTGGATTGTGATCACTACGTCAATAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATATTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATTGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATACAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCGGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGCTGGCCTTCCTGGTGTTTCTGCTGCTGCTGCGGTGGTTCAAGGAAGTCAAAGACGAAGAAGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCTCAAGGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGATTTGAAGGTTACGACGAGTTGGAGAAGTCATCACTTATGTCGCAAAAGAATTTCGAGAAAAGATTTGGACAGTCGCCTGTTTTCATCGCTTCCACTCTTAAGGAAGATGGAGGTCTTCCAGAAGGGATGAACAGCACATCACTCGTCAAAGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCGGTCACTGAGGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCACAGAGACCAGCTTTTAAGGGTTCAGCTCCGATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCATTGGGTTCTGTTGAAATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTCGAGAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTTTGTCTTCTCACTGGAAAATTCATTATCCCCACTTTGACGAACTTAGCTAGTGTCTGGTTCATGGCCCTATTTCTTTCCATCATTGCGACGGCTGTACTGGAGCTTCGATGGAGTGAAGTGAGTATTGAGGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGTGTAGACACCAACTTTACAGTTACAGCAAAAGCAGCCGACGACACCGAGTTTGGAGAACTCTATCTTTTCAAGTGGACAACCCTCCTTATCCCGCCGACCACTCTCATAATCCTGAACATGGTGGGAGTGGTTGCTGGAGTTTCTGATGCAATAAACAATGGCTACGGGTCATGGGGTCCTCTATTTGGAAAGCTATTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACGCCCACCATTGTAGTCCTTTGGTCCGTGCTTCTTGCATCCATTTTCTCACTGGTTTGGGTGCGAATTGATCCCTTCCTGCCCAAGCAAACTGGTCCAGTCCTCAAACAATGTGGAGTCGATTGCTAG 3129 47.71 MAGLVTGSQHYPHVANESHRGPASSMKTCRVCGDEIGLKDDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDDEEADDADDFDDEFPIKHHSNDEFESKQPNPSEHDNYNQKNWHQNVHSSFSVAGSVNGKEMEGEKDSYGNAEWKERIDKWKVRQEKRGLGNKDDESNHDQPLEDDFLLAEARQPLWRKVPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLAPIDFFVSSVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDALAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVDGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYIQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCFCCCCGGSRKSKTKKKGERGLLGGLFSRKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGMNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFLSIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9205889 9210989 + CmaCh17G013790.1 Cma17g01379 313274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01379 1042 MobiDBLite consensus disorder prediction 101 120 - -
Cma17g01379 1042 SUPERFAMILY Nucleotide-diphospho-sugar transferases 313 861 IPR029044 -
Cma17g01379 1042 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 154 1042 - -
Cma17g01379 1042 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 24 115 - -
Cma17g01379 1042 MobiDBLite consensus disorder prediction 1 23 - -
Cma17g01379 1042 SUPERFAMILY RING/U-box 22 99 - -
Cma17g01379 1042 Pfam Cellulose synthase 299 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma17g01379 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 154 1042 - -
Cma17g01379 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 115 - -
Cma17g01379 1042 Coils Coil 397 417 - -
Cma17g01379 1042 MobiDBLite consensus disorder prediction 80 129 - -
Cma17g01379 1042 CDD mRING-HC-C4C4_CesA_plant 27 77 - -
Cma17g01379 1042 Pfam Zinc-binding RING-finger 25 95 IPR027934 -
Cma17g01379 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
Cma17g01379 1042 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 410 591 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00457 Cma-Chr10:2078387 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma13g00589 Cma-Chr13:5847747 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma17g01379 Cma-Chr17:9205889 Cma08g00528 Cma-Chr8:3045951 0 dispersed
Cma18g00426 Cma-Chr18:2331917 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma17g01379 Cma-Chr17:9205889 Cma07g01319 Cma-Chr7:7466028 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01379 K10999 - csv:101205733 1972.59