Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01387 ATGGAAACCAGCAGCTATTTTGCAGCGTTGGTTACTCTCTTGGCTCTGGGTTCCATTTTTTTGTTGCAGAAAAGAAAGAACAGAGCCAAAAATCTCCCTCCGAGTCCCTGGGCTCTGCCCATCCTTGGTCATCTTCATCTCCTCAAGCACCCAGTCCACAGAACTTTACAGTCCCTCGCCCAGAAACACGGCCCAATTTTCACTCTCCGACTCGGCTCCCGTCTCGCCATCGTCGTATCATCGGCACCAGCCGTCGAAGAATGCTTCACCACAAACGACATCGTTTTCGCTAACCGCCCTCAATTCGTTTCCGGCATGTACCTCAGCTACGGCAACACCACGATGGGGGCTGCCCCGTACGGCGATCACTGGCGCAATCTAAGGCGCTTGAGCTCCACAGAAATCTTGTCGTCGATCCGCCTCAACATGTCGGCCGGTATCCGGAAGGAAGAAGTCAACATTTTACTCCGCAAATTGTATCAATTTTCGAGGCATGATTTTGGGAAAGTGAAATTGAAAACCCTGTTTTCGGAGCTGACATTCAACATAATTATGAGAATGGTGGCCGGAAAACGGTATTTCGGCGACGAAGTGACGGAATTGGAAGAGGCGAAAGAGTTCCGAGAAATTATGGAGACGTCGTTTCGATTGGGGTCGTACCCTGGTGATTTCTTACCATTCCTGAAGTGGGTTGATCGGCAATACCCCAAAAGGATGAAGAGTCTGGGCAGAGCCCTGGATTCGTTGCTGCAGAATTTGGTGGATGAACACCGGAGATATCAAAATGAAGGGAAAAAGCTTGATACCATGATCAGCCATCTGCTCTGTTTGCAGGAGTCTCAGCCCGAGTATTACTCAGATGAAATTATCAAAGGCCTCATCGTTACAATTTTAACAGCAGCGACGGAAACATCGTCTGTGACGATAGAATGGGCAATGTCCAATCTACTCAACCATCCAGAGGCATTAAACAAGGCCAGGGCTGAGCTTGACGCACAGATTGGGCAAGATCGGCTACTGGAAGAAGAAGACATCCCCACTCTGCCATACCTCCAGAACGTGATCTCTGAGACACTGCGCCTATACCCAGCAGCTCCACTCTTGGCGCCACATTTTTCATCCGAGAGTTGTTCTCTTGGGGGATACCATATTCCTGCTGGCACTACCATGTTGGTGAATGCGTGGGCGGTGCAAAGGGATCCCGAAGTTTGGGAGGACCCGACAAGGTTTAAACCTGAGAGGTTCGAGAGCGGGGGAGTGGCTGCCAACGCTTACAAATTCTTGCCGTTTGGATTGGGGAGGAGGGCTTGTCCTGGGATGGGCATGGCCAACCGTGTGGTGGGCTTGGCTTTGGGGTCACTGATTCAGAGCTTTGAGTGGAAGAGGGTGAGTGACGAGGAATTGGACATGACTGAAAGCCAAGGGATCTCTATGTACAAAGTTGAGCCATTGGAGGCCTTATGTAGAGCTCGCCCCATCATGAAAAACCTTGCATTTCATTGA 1503 50.37 METSSYFAALVTLLALGSIFLLQKRKNRAKNLPPSPWALPILGHLHLLKHPVHRTLQSLAQKHGPIFTLRLGSRLAIVVSSAPAVEECFTTNDIVFANRPQFVSGMYLSYGNTTMGAAPYGDHWRNLRRLSSTEILSSIRLNMSAGIRKEEVNILLRKLYQFSRHDFGKVKLKTLFSELTFNIIMRMVAGKRYFGDEVTELEEAKEFREIMETSFRLGSYPGDFLPFLKWVDRQYPKRMKSLGRALDSLLQNLVDEHRRYQNEGKKLDTMISHLLCLQESQPEYYSDEIIKGLIVTILTAATETSSVTIEWAMSNLLNHPEALNKARAELDAQIGQDRLLEEEDIPTLPYLQNVISETLRLYPAAPLLAPHFSSESCSLGGYHIPAGTTMLVNAWAVQRDPEVWEDPTRFKPERFESGGVAANAYKFLPFGLGRRACPGMGMANRVVGLALGSLIQSFEWKRVSDEELDMTESQGISMYKVEPLEALCRARPIMKNLAFH 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9243802 9245524 - CmaCh17G013870.1 Cma17g01387 313282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01387 500 Pfam Cytochrome P450 33 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 Gene3D Cytochrome P450 18 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PANTHER CYTOCHROME P450 9 496 - -
Cma17g01387 500 SUPERFAMILY Cytochrome P450 33 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 9 496 - -
Cma17g01387 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Cma17g01387 500 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g01387 500 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01805 Cma-Chr1:12029068 Cma17g01387 Cma-Chr17:9243802 6.74E-173 dispersed
Cma03g00950 Cma-Chr3:6782028 Cma17g01387 Cma-Chr17:9243802 0 dispersed
Cma09g00267 Cma-Chr9:1109388 Cma17g01387 Cma-Chr17:9243802 0 dispersed
Cma09g00271 Cma-Chr9:1122974 Cma17g01387 Cma-Chr17:9243802 5.76E-170 dispersed
Cma17g01387 Cma-Chr17:9243802 Cma20g00978 Cma-Chr20:5097701 4.09E-179 dispersed
Cma17g01387 Cma-Chr17:9243802 Cma08g00036 Cma-Chr8:187633 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01387 K13260 K25488 csv:101207828 775.007