Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g01392 ATGGCTGATGGTCATGAGACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGCAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGTAGGGTTAATCGCCAATCTGTTTTGGGCGCCATCACGTCTGCTCAGCAGAGACTCAAGTTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTATATACTGGAACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTTACAATTGATTTTGAGCCTTTCAGACCTATAAATGCTTCTCTCTATCTCTGCGACAACAAGTTCCATACGGAAGCCCTGAATGAACTTTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTTTTTGGGACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGCGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAATCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAACGGCACAACTATGTCAGGAAAACAGCAGAGCTTGCAACCCAGTTCTATATTAATCCGGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGCCAATCCGACATGTTTGATCCTCGTCTTCAGGCTAAAATACTTAATGTGGTTGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTTAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACGGGGAAATATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAGATACTCATTGTTTGGGAAAATTTGGATATCAATAGGTACGTATTAAAGAATGTTTCCACTGGTGAGGTTATTATAAAGCACTTGAATAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACCTCATCACCGCTGCTGAATTGGAGGTTCAAGAAAAAATGGCCTTGCTTGAATGGTTTGCAAATGAGTACAAGAAGTTCGGTTGTACCCTGGAATTCGTTACGAACAAATCACAGGAAGGATCACAATTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCCGATGGGGAAGAGTATGGTGATTCTGAATAG 1311 41.72 MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNVSTGEVIIKHLNKEQEANQSNFRDLITAAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9263986 9265296 - CmaCh17G013920.1 Cma17g01392 313287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g01392 436 Pfam eRF1 domain 1 18 138 IPR005140 -
Cma17g01392 436 Gene3D - 279 436 IPR029064 -
Cma17g01392 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 436 IPR004403 GO:0003747|GO:0006415
Cma17g01392 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Cma17g01392 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Cma17g01392 436 Pfam eRF1 domain 2 144 277 IPR005141 -
Cma17g01392 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
Cma17g01392 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 436 - -
Cma17g01392 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Cma17g01392 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Cma17g01392 436 SUPERFAMILY Translational machinery components 142 276 - -
Cma17g01392 436 Gene3D eRF1 domain 1 2 135 IPR024049 -
Cma17g01392 436 SMART eRF1_1_2 4 140 IPR005140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01392 Cma-Chr17:9263986 Cma08g00030 Cma-Chr8:164623 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g01392 K03265 - csv:101218139 832.787